DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Swim and Tinag

DIOPT Version :10

Sequence 1:NP_611652.2 Gene:Swim / 37537 FlyBaseID:FBgn0034709 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_036163.3 Gene:Tinag / 26944 MGIID:1349477 Length:475 Species:Mus musculus


Alignment Length:435 Identity:173/435 - (39%)
Similarity:235/435 - (54%) Gaps:44/435 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 DHTL------KRD-FPGPYCARENTCCKDRHDGCSVPI--SNTLCYCDEFCDRDDSSDCCPDYRS 79
            :||:      ||. |.|.||.|.. ||:.|.|.|....  :|.|||||.||:| |:|||||||:|
Mouse    37 NHTIFEGSRHKRAIFQGEYCRRFG-CCEARDDTCVTQFYEANALCYCDSFCER-DTSDCCPDYKS 99

  Fly    80 FCIGE---------VDPIISCEHNGVYFSKYNTTWDNCNECRCLEGGSVQCDEDLCLTDDAIVHS 135
            ||..|         .|| ..|..:..::.:.:...:|||.|.| .|...:|.:.:||....::..
Mouse   100 FCHEEKEEPPFQQPSDP-EGCFRDSQHYEEGSVVKENCNSCTC-SGQQWKCSQHVCLVHPELIDH 162

  Fly   136 VNSIHRLGWSARKYDQWWGRKYSEGLKLRLGTKEPT---YRVKAMTRLKNPTDGLPSSFNALDKW 197
            :|. ...||:|:.|.|:||....||.|.||||..|:   ..:..||....|...||..|.|..||
Mouse   163 INK-GDYGWTAQNYSQFWGMTLEEGFKFRLGTLPPSPMLLSMNEMTASFPPRADLPEIFIASYKW 226

  Fly   198 SSYISEVPDQGWCGASWVLSTTSVASDRFAIQSKGKENVQLSAQNILS-CTRRQQGCEGGHLDAA 261
            ..:.....||..|.|||..||.|||:||.||||||:....||.||::| |.:.:.||..|.:|.|
Mouse   227 PGWTHGPLDQKNCAASWAFSTASVAADRIAIQSKGRYTANLSPQNLISCCAKNRHGCNSGSIDRA 291

  Fly   262 WRYLHKKGVVDENCYPYTQHRDT----CKI--RHNSRSLRANGCQKPVNVDRDS-LYTVGPAYSL 319
            |.:|.|:|:|...|||..:.::|    |.:  |.:.|..|......|.:.::.: :|...|.|.:
Mouse   292 WWFLRKRGLVSHACYPLFKDQNTTNNICAMASRSDGRGKRHATKPCPNSFEKSNRIYQCSPPYRV 356

  Fly   320 -NREADIMAEIFHSGPVQATMRVNRDFFAYSGGVYRETAANRKAPTGF-----HSVKLVGWGEEH 378
             :.|.:||.||..:|||||.|:|:.|||.|..|:||...:..:.|..:     |:|||.|||...
Mouse   357 SSNETEIMREIIQNGPVQAIMQVHEDFFYYKTGIYRHVVSTNEEPEKYKKLRTHAVKLTGWGTLR 421

  Fly   379 NG----EKYWIAANSWGSWWGEHGYFRILRGSNECGIEEYVLASW 419
            ..    ||:||||||||..|||:||||||||.||..||:.::|:|
Mouse   422 GARGKKEKFWIAANSWGKSWGENGYFRILRGVNESDIEKLIIAAW 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SwimNP_611652.2 Somatomedin_B 41..84 CDD:460034 25/44 (57%)
Peptidase_C1A_CathepsinB 188..417 CDD:239111 104/246 (42%)
TinagNP_036163.3 Somatomedin_B 60..105 CDD:470596 25/46 (54%)
VWC 119..>166 CDD:450195 11/48 (23%)
Peptidase_C1A_CathepsinB 217..465 CDD:239111 104/247 (42%)

Return to query results.
Submit another query.