DRSC/TRiP Functional Genomics Resources

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Protein Alignment Swim and Ctsw

DIOPT Version :10

Sequence 1:NP_611652.2 Gene:Swim / 37537 FlyBaseID:FBgn0034709 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_034115.2 Gene:Ctsw / 13041 MGIID:1338045 Length:371 Species:Mus musculus


Alignment Length:245 Identity:76/245 - (31%)
Similarity:109/245 - (44%) Gaps:52/245 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 KWSSYISEVPDQGWCGASWVLSTTSVASDRFAIQS----KGKENVQLSAQNILSCTRRQQGCEGG 256
            |..:.||.|.:||.|...|.::    |:|.  ||:    |.::.|.:|.|.:|.|.|...||.||
Mouse   134 KAKNIISSVKNQGSCKCCWAMA----AADN--IQALWRIKHQQFVDVSVQELLDCERCGNGCNGG 192

  Fly   257 HL-DAAWRYLHKKGVVDENCYPYTQHRDTCKIRHNSRSLRANGC----QKPVNVDRDSLYTVGPA 316
            .: ||....|:..|:..|..||:...|            :.:.|    .|.|...:|  :|:   
Mouse   193 FVWDAYLTVLNNSGLASEKDYPFQGDR------------KPHRCLAKKYKKVAWIQD--FTM--- 240

  Fly   317 YSLNREADIMAEIFHSGPVQATMRVNRDFFA-YSGGVYRETAANRKAPTGFHSVKLVGWGEEHNG 380
             ..|.|..|...:...||:  |:.:|..... |..||.:.|.::.......|||.|||:|:|..|
Mouse   241 -LSNNEQAIAHYLAVHGPI--TVTINMKLLQHYQKGVIKATPSSCDPRQVDHSVLLVGFGKEKEG 302

  Fly   381 ----------------EKYWIAANSWGSWWGEHGYFRILRGSNECGIEEY 414
                            ..|||..||||:.|||.||||:.||:|.||:.:|
Mouse   303 MQTGTVLSHSRKRRHSSPYWILKNSWGAHWGEKGYFRLYRGNNTCGVTKY 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SwimNP_611652.2 Somatomedin_B 41..84 CDD:460034
Peptidase_C1A_CathepsinB 188..417 CDD:239111 76/245 (31%)
CtswNP_034115.2 Inhibitor_I29 40..96 CDD:214853
Peptidase_C1A 127..356 CDD:239068 76/245 (31%)
Blue background indicates that the domain is not in the aligned region.

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