DRSC/TRiP Functional Genomics Resources

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Protein Alignment Swim and Ctsh

DIOPT Version :10

Sequence 1:NP_611652.2 Gene:Swim / 37537 FlyBaseID:FBgn0034709 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_031827.2 Gene:Ctsh / 13036 MGIID:107285 Length:333 Species:Mus musculus


Alignment Length:306 Identity:97/306 - (31%)
Similarity:139/306 - (45%) Gaps:42/306 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 SVNSIHRLGWSARKY-----------------DQWWGRKYSEGLKLRLGTKEPTYRVKAMTRLKN 182
            ||...|||...|..:                 :|:....::| :|.:....||.......:....
Mouse    46 SVEYNHRLQMFANNWRKIQAHNQRNHTFKMALNQFSDMSFAE-IKHKFLWSEPQNCSATKSNYLR 109

  Fly   183 PTDGLPSSFNALDKWSSYISEVPDQGWCGASWVLSTTSVASDRFAIQSKGKENVQLSAQNILSCT 247
            .|...|||.:...| .:.:|.|.:||.||:.|..|||.......||.| || .:.|:.|.::.|.
Mouse   110 GTGPYPSSMDWRKK-GNVVSPVKNQGACGSCWTFSTTGALESAVAIAS-GK-MLSLAEQQLVDCA 171

  Fly   248 R--RQQGCEGGHLDAAWRY-LHKKGVVDENCYPYTQHRDTCKIRHNSRSLRANGCQKPVNVDRDS 309
            :  ...||:||....|:.| |:.||:::|:.|||.....:|  |.|.:...| ..:..||:    
Mouse   172 QAFNNHGCKGGLPSQAFEYILYNKGIMEEDSYPYIGKDSSC--RFNPQKAVA-FVKNVVNI---- 229

  Fly   310 LYTVGPAYSLNREADIMAEIFHSGPVQATMRVNRDFFAYSGGVYRETAANRKAPTGFHSVKLVGW 374
                    :||.||.::..:....||.....|..||..|..|||...:.::......|:|..||:
Mouse   230 --------TLNDEAAMVEAVALYNPVSFAFEVTEDFLMYKSGVYSSKSCHKTPDKVNHAVLAVGY 286

  Fly   375 GEEHNGEKYWIAANSWGSWWGEHGYFRILRGSNECGIEEYVLASWP 420
            ||: ||..|||..|||||.|||:|||.|.||.|.||:.  ..||:|
Mouse   287 GEQ-NGLLYWIVKNSWGSQWGENGYFLIERGKNMCGLA--ACASYP 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SwimNP_611652.2 Somatomedin_B 41..84 CDD:460034
Peptidase_C1A_CathepsinB 188..417 CDD:239111 82/231 (35%)
CtshNP_031827.2 Inhibitor_I29 33..88 CDD:462410 8/42 (19%)
Peptidase_C1A 115..329 CDD:239068 84/234 (36%)
Blue background indicates that the domain is not in the aligned region.

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