DRSC/TRiP Functional Genomics Resources

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Protein Alignment Swim and LOC1274680

DIOPT Version :10

Sequence 1:NP_611652.2 Gene:Swim / 37537 FlyBaseID:FBgn0034709 Length:431 Species:Drosophila melanogaster
Sequence 2:XP_313836.5 Gene:LOC1274680 / 1274680 VectorBaseID:AGAMI1_008026 Length:334 Species:Anopheles gambiae


Alignment Length:316 Identity:101/316 - (31%)
Similarity:145/316 - (45%) Gaps:65/316 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 HSVNSIHRLGWSARKYDQWWGRKYSEGLKLRLGTKEPTYRVKAMTRLKNPTDGLPSSFNALDKWS 198
            |:..|:..:|.|                  |.|.|.|..|.:.:..:     .:|.||:|.:.|.
Mosquito    57 HAFRSLKGIGES------------------RTGFKVPIRRYEYVYDV-----DIPESFDARNHWP 98

  Fly   199 S--YISEVPDQGWCGASWVLSTTSVASDRFAIQSKGKENVQLSAQNILS-CTRRQQGCEGGHLD- 259
            :  .:..:.:||.||:.|.::..||.|||..|.|.|..||.|:|::::. |.....||.||.|| 
Mosquito    99 NCESLRAIRNQGTCGSCWAVAAASVMSDRVCIHSNGTINVALAAEDLMGCCVDCGNGCNGGFLDG 163

  Fly   260 AAWRYLHKKGVVDENCYPYTQHRDTCKIRHNSRSLRANGCQKPVN-----------------VDR 307
            .:::|....|:|....|..|   |.||      ......|:.|.|                 |||
Mosquito   164 TSFQYWVDAGLVSGGAYNST---DGCK------PYPFKPCEYPFNDCHVEISPKCTHHCRDGVDR 219

  Fly   308 ----DSLYTVGP-AYSLNR-EADIMAEIFHSGPVQATMRVNRDFFAYSGGVYRETAANRKAPTGF 366
                |.|:  |. |||:.| |..|..||..:|||:|...|..|...|..||||.....:   .|.
Mosquito   220 HYSKDKLF--GKVAYSVPRDERAIRYEIMTNGPVEAGFDVYEDVLLYKSGVYRHVYGEQ---IGK 279

  Fly   367 HSVKLVGWGEEHNGEKYWIAANSWGSWWGEHGYFRILRGSNECGIEEYVLASWPYV 422
            |:|:::|||.: .|..||:.|||:|..||:||||:.:||||..|||..::...|.:
Mosquito   280 HAVRIIGWGRD-GGIPYWLIANSYGDDWGDHGYFKFVRGSNHLGIESKIITGLPLI 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SwimNP_611652.2 Somatomedin_B 41..84 CDD:460034
Peptidase_C1A_CathepsinB 188..417 CDD:239111 91/255 (36%)
LOC1274680XP_313836.5 Peptidase_C1A_CathepsinB 88..330 CDD:239111 91/256 (36%)
Blue background indicates that the domain is not in the aligned region.

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