DRSC/TRiP Functional Genomics Resources

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Protein Alignment Swim and LOC1273088

DIOPT Version :10

Sequence 1:NP_611652.2 Gene:Swim / 37537 FlyBaseID:FBgn0034709 Length:431 Species:Drosophila melanogaster
Sequence 2:XP_061503275.1 Gene:LOC1273088 / 1273088 VectorBaseID:AGAMI1_013370 Length:1846 Species:Anopheles gambiae


Alignment Length:238 Identity:73/238 - (30%)
Similarity:114/238 - (47%) Gaps:36/238 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 LPSSFNALDKWSSY--ISEVPDQGWCGASWVLSTTSVASDRFAIQSKGKENVQLSAQNILSCTRR 249
            ||.||:    |..:  ::||.:||.||:.|..|..........|::|..|:  .|.|.::.|.:.
Mosquito  1626 LPRSFD----WRDHGAVTEVKNQGSCGSCWAFSAVGNVEGLHQIKTKKLES--YSEQELIDCDKV 1684

  Fly   250 QQGCEGGHLDAAWRYLHKKGVVD-ENCYPY-TQHRDTCKIRHNSRSLRANGCQKPVNVDRDSLYT 312
            ..||.||::|.|::.:.:.|.:: ||.||| .:.:.:|   |.:|||.....:..|::.::..| 
Mosquito  1685 DNGCGGGYMDDAFKAIEQLGGLELENDYPYEAKAQKSC---HFNRSLSHVQVKGAVDMPKNETY- 1745

  Fly   313 VGPAYSLNREADIMAEIFHSGPVQATMRVNRDFFAYSGGVYR--ETAANRKAPTGFHSVKLVGWG 375
                        |...:..:||:...:..|...| |.||:..  ....|.|:..  |.|.:||:|
Mosquito  1746 ------------IAQYLIKNGPIAIGLNANAMQF-YRGGISHPWHPLCNHKSID--HGVLIVGYG 1795

  Fly   376 EE-----HNGEKYWIAANSWGSWWGEHGYFRILRGSNECGIEE 413
            .:     :....|||..||||..|||.||:||.||.|.||:.|
Mosquito  1796 IKEYPMFNKTLPYWIIKNSWGPRWGEQGYYRIYRGDNSCGVSE 1838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SwimNP_611652.2 Somatomedin_B 41..84 CDD:460034
Peptidase_C1A_CathepsinB 188..417 CDD:239111 72/237 (30%)
LOC1273088XP_061503275.1 None
Blue background indicates that the domain is not in the aligned region.

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