DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vps35 and vps35

DIOPT Version :9

Sequence 1:NP_726175.3 Gene:Vps35 / 37536 FlyBaseID:FBgn0034708 Length:822 Species:Drosophila melanogaster
Sequence 2:NP_588260.2 Gene:vps35 / 2539462 PomBaseID:SPCC777.13 Length:836 Species:Schizosaccharomyces pombe


Alignment Length:861 Identity:273/861 - (31%)
Similarity:446/861 - (51%) Gaps:113/861 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 NGL----DDQEKLLAEAIGLARKQAFQMNHFLDKERMLDSLKCASTMLGELRTSVLSPKSYYELY 84
            ||:    ::..:.|.|::.:.::.:..|...|...|::|:.:..|..|.|:|.|.|:||.|||||
pombe     2 NGINTANEEITRSLEESLNICKQSSRLMQRNLQTGRLMDAFRNCSISLVEMRNSALTPKQYYELY 66

  Fly    85 MAVTNEL-----CHLELYLSEKIDKKTDLYELVQYSHTIVPRLYLLITVGIVYIKNDPTLKRSIL 144
            |.....|     ..||.:|: ......||||||||:.:|||||||:||||..|::....|.|.|:
pombe    67 MFNMESLRLLGGTLLETHLN-GTHNLMDLYELVQYAGSIVPRLYLMITVGSAYLETPNALVREIM 130

  Fly   145 KDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDVMVEENEHE----GNVYDAIDFVLTNFAEMNK 205
            .||::|||||||||||||||:|||..||..||  :..|:|.:    |.|.|::.|::.||.||||
pombe   131 NDLLDMCRGVQHPLRGLFLRHYLLTQTRKGLP--LGSEDEEDASRKGTVLDSVKFLVINFTEMNK 193

  Fly   206 LWVRMQHQGHSSEKTRREKEREELKILVGTNLVRLSQLESATLEIYQRLILPGILEQVVSCRDAI 270
            ||||:||.|...|.::|.:||.|||:|||.|||||||| :..::.|:..:||.|:||::.|||::
pombe   194 LWVRIQHLGPIKEFSKRTQERNELKVLVGLNLVRLSQL-NLDIDTYRDHVLPAIIEQIIECRDSL 257

  Fly   271 AQEYLMECIIQVFPDEFHLKTLDPFLKSCAQLETGVNVKNIIISLIERLAAYNQR------SGKT 329
            |||||:|.|.|.|.|..||:|||.:..:..:|...|||..::::::.||..|.||      |.:.
pombe   258 AQEYLVEVICQAFSDNMHLQTLDTYFGTVIKLSPSVNVTQLVVAMLNRLTDYVQREYESDSSNED 322

  Fly   330 SGNAI-----------------------DAIIPAEVELFEVFSVQVANIVQTRMDMPLEDTISLQ 371
            ....:                       |.:||.|..:.||....|..::|:|..:||:..:|:.
pombe   323 ESETVTEKLGDIKINEEVQQKDEQECPGDKVIPPEYAIQEVLWSHVVEVIQSRSGLPLDCIVSIL 387

  Fly   372 VALLSLAQKVYPDRVDYVDKVLG-TTAQILQRMNMNNISHLLSVNQELSRLLRICIDFYNNALTI 435
            .::|:...:.||.:..|.|:|.. ....|:.:.::.:..|...:.:.|..:|.:.:.::.:....
pombe   388 SSILNFFLRCYPYKPQYADRVFQYINEHIINQPSLRSALHERPLQKSLCAILLLPLTYFPSFSYC 452

  Fly   436 IQLQNFCPLLEKFDYTSRKSLALYLVMNILDNETLVPTADQADSLLTIITPLIKDDDTNKENGAA 500
            ::||||.|:....|...|..:|..:|..|::....:....:|..||..::.:|            
pombe   453 LELQNFLPVFNAQDPNLRYDIARMIVQKIIEKGHSLSELTEAQELLGFVSVII------------ 505

  Fly   501 AGNTTPDAEEFAEEQGV--------VARFIHLMRSDEPDMQYKMLQTARKHLGNGGGQRLKHVLP 557
                        |::||        ||..:|.:.:|:|.:|.::|::. |......|:.:|::||
pombe   506 ------------EKKGVDSLDDLQNVALMVHYLNNDDPQIQIEILRSL-KDTFIKAGENVKYLLP 557

  Fly   558 PLVFAAYQLAFKYKAIAEQDENWDKKCQKIVQYCHSTISALAK-ADLADLALRLYLQGALVIGEI 621
            .:|.....||..::.....|  |.:|.:.:.::.::.|:.|.| .|..:|.|.|||..|.:..: 
pombe   558 VVVNRCIFLARNFRIFKCMD--WAEKVRLLWEFVNTCINVLYKNGDSLELCLALYLSAAEMADQ- 619

  Fly   622 GYTNHETVAYEFMTQAFSLYEDEISDSKAQLAAITLIMSTFEQMSCFGEENAEPLRTNCALAASK 686
              .|:...||||.|||||:||:.:.||:.|...:.:|:...::...|..::.:.|.|.|.|.|||
pombe   620 --ENYPDFAYEFFTQAFSIYEESVLDSELQYQQLLMIIGKLQKTRNFSVDDYDTLITKCTLYASK 682

  Fly   687 LLKKPDQCRGVVACAALFWSGKQNGEEMR---DEKRTLDCLKKGARIASQCLDTGVQVQLYVELL 748
            ||||||||.|:...:.|:|. ..:||:.|   |.||.|:||:|..:||..|:|....::|::.:|
pombe   683 LLKKPDQCCGIYLASHLWWQ-VASGEDSRPFQDPKRVLECLQKSLKIADACMDQLTSLKLFINIL 746

  Fly   749 NHYLFYFERGNSLITVAMLNQLIAKVNEELPNL-----------EPSEETKQI------------ 790
            ..|.:|:::....|....::.||....:.:.::           :|......|            
pombe   747 ERYFYYYDQHCESIIAKHISGLIDLTEQNMRSILISSPADLIASDPRAYASSIWEVANVSVIDSL 811

  Fly   791 ESHYKNTLAHIRSRME 806
            ::|.:...|:...|.|
pombe   812 KNHLERATAYAEKRSE 827

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps35NP_726175.3 Vps35 32..777 CDD:281615 265/795 (33%)
vps35NP_588260.2 Vps35 14..775 CDD:281615 265/795 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 425 1.000 Domainoid score I83
eggNOG 1 0.900 - - E1_KOG1107
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6221
Inparanoid 1 1.050 427 1.000 Inparanoid score I332
OMA 1 1.010 - - QHG54026
OrthoFinder 1 1.000 - - FOG0003201
OrthoInspector 1 1.000 - - oto101458
orthoMCL 1 0.900 - - OOG6_101945
Panther 1 1.100 - - LDO PTHR11099
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1652
SonicParanoid 1 1.000 - - X2604
TreeFam 1 0.960 - -
1413.860

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