DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fbxo42 and AT4G04670

DIOPT Version :10

Sequence 1:NP_611647.1 Gene:Fbxo42 / 37532 FlyBaseID:FBgn0034704 Length:667 Species:Drosophila melanogaster
Sequence 2:NP_567268.2 Gene:AT4G04670 / 825800 AraportID:AT4G04670 Length:995 Species:Arabidopsis thaliana


Alignment Length:384 Identity:83/384 - (21%)
Similarity:133/384 - (34%) Gaps:122/384 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDASRYKVDG-------------------ENDNCGATLAA------VNLNVLPDEILEFIFTYLP 40
            |||:|.:.||                   |:||. ..|||      .|.|:.|....|.|     
plant   194 MDANRKRTDGFSVALASNGFKNPDENDVDEDDNY-ENLAANHDSSINNGNLYPGVQKELI----- 252

  Fly    41 PYGDLEHCSLV------CKRW-HAIVKNLVRRSRHNLEKGLIDFRLRWEVFSQQTVNGGAGAL-- 96
               .||..|:|      ...| |:..              .||...|.||.    |.||.|..  
plant   253 ---PLEKLSIVGEPVEKLHLWGHSAC--------------TIDESDRKEVI----VFGGFGGFGR 296

  Fly    97 ----------------LSFIA------GRFAHSAVRQDNSMYVFGGGSSSDTTFNDLWRFDLTHM 139
                            |..||      .|..|:|....:.|:|.||.:......||:||.|::..
plant   297 HARRNESLLLNPSCGTLKLIAVNESPSARLGHTASMVGDFMFVIGGRADPLNILNDVWRLDISTG 361

  Fly   140 RWARPVATGTYPSPKGSASMVAWRNQLILFGGWRYPSLHPPYQPWCLFDE-----LHYYDLGKNR 199
            .|:.....|:...|:...:..:...::.:|||              |:::     :|..|....:
plant   362 EWSSQRCVGSEFPPRHRHAAASVGTKVYIFGG--------------LYNDKIVSSMHILDTKDLQ 412

  Fly   200 WL-LRSSLSSPPPMAGHSATVHGDRMVVFGGYQ----IKD--DFNVNSNDTWVLDLPEQRWWQPL 257
            |. :......|.....|:...:|.:..:||||.    :.|  .|:|.| .:|.|::...:|    
plant   413 WKEVEQQGQWPCARHSHAMVAYGSQSFMFGGYNGENVLNDLYSFDVQS-CSWKLEVISGKW---- 472

  Fly   258 FVGNTRPSPRYGQIQVELGRNHLLIVGGCGGANRVYTDAWLLDMTRDVWSWKSIAVRNK 316
                  |..|:.. .:.:.::.:.|:||| ..::...:..|||:...:|....:...||
plant   473 ------PHARFSH-SMFVYKHTIGIIGGC-PVSQNCQELTLLDLKHRLWRSVRLEFMNK 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fbxo42NP_611647.1 F-box_FBXO42 24..61 CDD:438882 10/43 (23%)
NanM <101..307 CDD:442289 46/223 (21%)
KELCH repeat 103..148 CDD:276965 13/44 (30%)
KELCH repeat 154..209 CDD:276965 7/60 (12%)
KELCH repeat 212..257 CDD:276965 13/50 (26%)
KELCH repeat 267..314 CDD:276965 9/46 (20%)
AT4G04670NP_567268.2 TYW3 6..210 CDD:460649 6/15 (40%)
NanM 322..>543 CDD:442289 48/229 (21%)
KELCH repeat 325..372 CDD:276965 14/46 (30%)
KELCH repeat 376..423 CDD:276965 7/60 (12%)
KELCH repeat 426..464 CDD:276965 10/38 (26%)
KELCH repeat 476..516 CDD:276965 9/41 (22%)
Trm5 601..995 CDD:442010
Blue background indicates that the domain is not in the aligned region.

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