DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fbxo42 and Klhdc3

DIOPT Version :10

Sequence 1:NP_611647.1 Gene:Fbxo42 / 37532 FlyBaseID:FBgn0034704 Length:667 Species:Drosophila melanogaster
Sequence 2:NP_082186.2 Gene:Klhdc3 / 71765 MGIID:2651568 Length:382 Species:Mus musculus


Alignment Length:299 Identity:74/299 - (24%)
Similarity:124/299 - (41%) Gaps:38/299 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 LRWEVFS--QQTVNGGAGALLSFIAGRFAHSAVRQDNSMYVFGGGSSSDTTFNDLWRFDLTHMRW 141
            |||....  :..|.|.| .::.::  |:.||.|..|::::::||.:.::...|.|:.||:...:|
Mouse    54 LRWTKLPPVRPAVRGQA-PVVPYM--RYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKW 115

  Fly   142 ARPVATGTYPSPKGSASMVAWRNQLILFGGWRYPSLHPPYQPWCLFDELHYYDLGKNRWLLRSSL 206
            :.|..:|..|..:...|.......:.:|||  |..|..     |..:::|..|.....|.|..:.
Mouse   116 STPRVSGAVPGARDGHSACVLGKIMYIFGG--YEQLAD-----CFSNDIHKLDTSTMTWTLVCTK 173

  Fly   207 SSPPPMAG-HSATVHGDRMVVFGGYQIK-DDFNVNS----NDTWVLDLPEQRWWQ----PLFVGN 261
            .:|..... ||||:.|:.|.||||...: ..|:.|:    |...|.|...:.|..    |:....
Mouse   174 GNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPHTPVLPEG 238

  Fly   262 TRPSPRYGQIQVELGRNHLLIVGGCGG-ANRVYTDAWLLDMTRDVWSWKSIAVRNKRFGAVHMWC 325
            .|....:|.      ...|.|.||... .||.:.|.|  ......::||.|..:.|........|
Mouse   239 RRSHSAFGY------NGELYIFGGYNARLNRHFHDLW--KFNPGSFTWKKIEPKGKGPCPRRRQC 295

  Fly   326 NPGCKVNNYLVVVG---PSP--NMPQDFQMMKQSRVPVV 359
              .|.|.:.:|:.|   |||  .:..:|.::..|.:.::
Mouse   296 --CCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHIL 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fbxo42NP_611647.1 F-box_FBXO42 24..61 CDD:438882
NanM <101..307 CDD:442289 54/216 (25%)
KELCH repeat 103..148 CDD:276965 13/44 (30%)
KELCH repeat 154..209 CDD:276965 11/54 (20%)
KELCH repeat 212..257 CDD:276965 16/54 (30%)
KELCH repeat 267..314 CDD:276965 12/47 (26%)
Klhdc3NP_082186.2 NanM 14..308 CDD:442289 68/273 (25%)
KELCH repeat 14..62 CDD:276965 3/7 (43%)
Kelch 1 25..77 6/25 (24%)
KELCH repeat 77..124 CDD:276965 14/46 (30%)
Kelch 2 88..138 11/49 (22%)
KELCH repeat 128..173 CDD:276965 11/51 (22%)
Kelch 3 139..189 15/56 (27%)
KELCH repeat 180..236 CDD:276965 17/55 (31%)
Kelch 4 191..249 14/63 (22%)
KELCH repeat 239..283 CDD:276965 13/51 (25%)
Kelch 5 251..301 15/53 (28%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.