DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fbxo42 and klhdc3l

DIOPT Version :10

Sequence 1:NP_611647.1 Gene:Fbxo42 / 37532 FlyBaseID:FBgn0034704 Length:667 Species:Drosophila melanogaster
Sequence 2:XP_683707.1 Gene:klhdc3l / 555952 ZFINID:ZDB-GENE-070912-527 Length:422 Species:Danio rerio


Alignment Length:303 Identity:71/303 - (23%)
Similarity:117/303 - (38%) Gaps:56/303 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 VNGGAGALL--------SFIAGRFAHSAVRQDNSMYVFGGGSSSDTTFNDLWRFDLTHMRWAR-P 144
            :|.|:||.|        .....|:.|::......:|:.||  ....:..|.|::::....|.. |
Zfish     1 MNQGSGACLWTPVPQQCPAPCDRYKHASCAHRGHVYLLGG--REKCSLRDFWKYNVVCNDWVELP 63

  Fly   145 VATGTYPSPKGSASMVAWRNQLILFGGWRYPSLHPPYQPWCLFDELHYYDLGKNRWLLRSSLS-- 207
            ..:...|......:|||.:..|.:|||.|..|......|      |..:|.||..|:...:.|  
Zfish    64 CDSEEAPEEVEEHTMVAHQGFLYVFGGLRDSSYSNSKTP------LWVFDTGKECWINWKAASVA 122

  Fly   208 ----SPPPMAGHSATVHGDRMVVFGGYQIKDDFNVNSNDTWVLDLPEQRWWQPLFVGNTRPSPRY 268
                :|....||||.:.|..|.::|||   .|...::.:.|..|. |.|.|.........|.||:
Zfish   123 LQGVTPGNRKGHSAVILGSSMYIYGGY---IDIKGSTKEFWKFDF-ESRLWSLRSSAQVGPGPRH 183

  Fly   269 GQIQVELGRNHLLIVGGCGGANRVYTDAWLLDMTRDVWSWKSIAVRNKRFGAVHMWCNPGCKVNN 333
            ....|..| ..:.:.||..|          |...:|:|||.|   .::.:..:.....|...|.:
Zfish   184 SHSAVTHG-EWMYLYGGLQG----------LREQKDLWSWSS---ASQTWSCIKFHSGPSRLVGH 234

  Fly   334 YLVVV---------GPSPNMPQD----FQMMKQS--RVPVVGG 361
            ..|:.         |.:.:.||:    |.:..|:  ::|::.|
Zfish   235 SAVLFKDSILIFGGGETQSSPQNSLWKFNLETQTWKKLPLLPG 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fbxo42NP_611647.1 F-box_FBXO42 24..61 CDD:438882
NanM <101..307 CDD:442289 52/212 (25%)
KELCH repeat 103..148 CDD:276965 9/45 (20%)
KELCH repeat 154..209 CDD:276965 16/60 (27%)
KELCH repeat 212..257 CDD:276965 15/44 (34%)
KELCH repeat 267..314 CDD:276965 12/46 (26%)
klhdc3lXP_683707.1 NanM 10..295 CDD:442289 66/294 (22%)
KELCH repeat 23..69 CDD:276965 9/47 (19%)
KELCH repeat 73..130 CDD:276965 17/62 (27%)
KELCH repeat 131..175 CDD:276965 15/47 (32%)
KELCH repeat 182..228 CDD:276965 12/59 (20%)
KELCH repeat 231..276 CDD:276965 8/44 (18%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.