DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fbxo42 and Hcf

DIOPT Version :10

Sequence 1:NP_611647.1 Gene:Fbxo42 / 37532 FlyBaseID:FBgn0034704 Length:667 Species:Drosophila melanogaster
Sequence 2:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster


Alignment Length:709 Identity:138/709 - (19%)
Similarity:218/709 - (30%) Gaps:248/709 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 HNLEKGLIDFRLRWEVFSQQTVNGGAGALLSFIAG-----RFAHSAVRQDNSMYVFGGGSSSDTT 127
            |.|:..|..|  ||:.....|             |     |..|.|:.....|.|||||  ::..
  Fly    49 HQLDSNLTGF--RWKRVLNPT-------------GPQPRPRHGHRAINIKELMVVFGGG--NEGI 96

  Fly   128 FNDLWRFDLTHMRWARPVATGTYPSPKGSASMVAWRNQLILFGGW----RYPSLHPPYQPWCLFD 188
            .::|..::....:|..||..|..|:...:...|....::.:|||.    :|.            :
  Fly    97 VDELHVYNTVTNQWYVPVLKGDVPNGCAAYGFVVEGTRMFVFGGMIEYGKYS------------N 149

  Fly   189 ELHYYDLGKNRWLLR-------SSLSSPPPMAGHSATVHGDRMVVFGGYQIKDDFNVNS-----N 241
            ||  |:|...:|..|       .|..||.|..|||.|:.|:::.:|||...:.|...|:     |
  Fly   150 EL--YELQATKWEWRKMYPESPDSGLSPCPRLGHSFTMVGEKIFLFGGLANESDDPKNNIPKYLN 212

  Fly   242 DTWVLDL-----PEQRWWQPLFVGNTRPSPRYGQIQVEL-----GRNHLLIVGGCGGANRVYTDA 296
            |.::||.     ...:|..|...|:: |.||.....:..     |..:|||.||..|..  ..|.
  Fly   213 DLYILDTRGVHSHNGKWIVPKTYGDS-PPPRESHTGISFATKSNGNLNLLIYGGMSGCR--LGDL 274

  Fly   297 WLLDMTRDVWS-----------------------------WKSIAVRNKRFGAVHMWCNPGCKVN 332
            |||:.....||                             |..:.:.:.:......|     |..
  Fly   275 WLLETDSMTWSKPKTSGEAPLPRSLHSSTMIGNKMYVFGGWVPLVINDSKSTTEREW-----KCT 334

  Fly   333 NYLVVVGPSPNMPQDFQMMKQSRVPVVGGRGPPPPNPLQNVPPRGYRIPVPDRRLGGGGLGGPGQ 397
            |.|.|:        |.:.|....|.:        ....:|||                      :
  Fly   335 NTLAVL--------DLETMTWENVTL--------DTVEENVP----------------------R 361

  Fly   398 NRGGNIRPGVGGAAAALGPQEQYLANRRAILNQ-------------------------------- 430
            .|.|:...|:.........::.|   |:|..||                                
  Fly   362 ARAGHCAVGIQSRLYVWSGRDGY---RKAWNNQVCCKDLWYLEVSKPLYAVKVALVRASTHALEL 423

  Fly   431 -------------HMQQAQQFLHNSNVNNNNNNYQ---PRSGRLSDLHAPPAAAAAA-------- 471
                         .:|:.:|.|:.|:...:||..|   |.|...|.::.....:.:|        
  Fly   424 SWTATTFAAAYVLQIQKIEQPLNTSSKLLSNNIVQQGTPTSAETSGINISANRSGSALGLGVEAT 488

  Fly   472 ----------------SPPS---PPV--------RPNAPPSPADGD-VDAAQRLQRNLALRCRDN 508
                            .|.:   |.|        :|::|.|.||.| :.:......||:......
  Fly   489 STVLKLEKESLQLSGCQPETNVQPSVNDLLQSMSQPSSPASRADKDPLSSGGGTTFNLSTSVASV 553

  Fly   509 EPRLPKRFDELYEDPFRMAAFNVPTRSRSASRDHNERIRRMEEKMNAIRNSRRSAPAAAQVEPQP 573
            .|::         ......|......:.|.|...|..:::....:.|:|.|..:|.:.|.....|
  Fly   554 HPQI---------SVISSTAAVTGNDTASPSGAINSILQKFRPVVTAVRTSTTTAVSIATSTSDP 609

  Fly   574 LRAPSPKRLRCNVQSLFVCDISGILDSSEPALEWVEYKNFGVLKGAPDRLILSSLIAGN 632
            |....|..:..||          :|.||...|..|.     .:..:....|.||..:||
  Fly   610 LSVRVPSTMSANV----------VLSSSSSTLRIVP-----SVTASHSLRIASSQASGN 653

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fbxo42NP_611647.1 F-box_FBXO42 24..61 CDD:438882
NanM <101..307 CDD:442289 62/236 (26%)
KELCH repeat 103..148 CDD:276965 13/44 (30%)
KELCH repeat 154..209 CDD:276965 12/65 (18%)
KELCH repeat 212..257 CDD:276965 15/54 (28%)
KELCH repeat 267..314 CDD:276965 15/80 (19%)
HcfNP_524621.2 PLN02193 <59..363 CDD:177844 79/378 (21%)
KELCH repeat 74..115 CDD:276965 12/42 (29%)
KELCH repeat 123..175 CDD:276965 12/65 (18%)
KELCH repeat 178..239 CDD:276965 17/61 (28%)
KELCH repeat 297..360 CDD:276965 10/83 (12%)
FN3 <1307..>1381 CDD:442628
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
Blue background indicates that the domain is not in the aligned region.

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