DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fbxo42 and klhdc4

DIOPT Version :10

Sequence 1:NP_611647.1 Gene:Fbxo42 / 37532 FlyBaseID:FBgn0034704 Length:667 Species:Drosophila melanogaster
Sequence 2:XP_002936149.3 Gene:klhdc4 / 394683 XenbaseID:XB-GENE-987963 Length:579 Species:Xenopus tropicalis


Alignment Length:296 Identity:70/296 - (23%)
Similarity:118/296 - (39%) Gaps:64/296 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 RFAHSAV---RQDNSMYVFGGGSSSDT-----TFNDLWRFDLTHMRWARPVATGTYPSPKGSASM 159
            |.||.|.   :....:::|||..:|..     .:.|||...|....|.:..|:|. ||.:....|
 Frog   119 RCAHQAAAVPQGGGQIWIFGGEFASPDGEQFYHYKDLWVLHLQTKTWEQIKASGG-PSGRSGHRM 182

  Fly   160 VAWRNQLILFGGWRYPSLHPPYQPWCLFDELHYYDLGKNRWL-LRSSLSSPPPMAGHSATVHGD- 222
            ...:.|||:|||:     |...:.:..:::::.::|....|. |..|.::|.|.:|...|.:.| 
 Frog   183 TYCKRQLIVFGGF-----HESTRDYIYYNDVYTFNLDSFTWAKLSPSGTAPLPRSGCQMTTNQDG 242

  Fly   223 RMVVFGGY---QIKDDFNVNSNDTWVLDLPEQ---RW-WQPLFVGNTRPSPRYGQIQVELG-RNH 279
            .:|::|||   ::|.|.:..:..|.:..|.::   :| |..|.....:|:||.| ....|| .|.
 Frog   243 SVVIYGGYSKQKVKKDVDKGTVHTDMFLLKQEGADKWVWSRLNPSGVKPTPRTG-FSGTLGPNNR 306

  Fly   280 LLIVGGCGGANR-------VYTDAWLLDMTRDVWSWKSIAVRNKRFGAVHMWCNPGCKVNNYLVV 337
            :|:.||......       .:.|.::.||.::.|....|.                         
 Frog   307 ILLFGGVYDEEEEESIEGDFFNDIYMYDMGKNRWFTGQIK------------------------- 346

  Fly   338 VGPSPNMPQDFQMMKQ------SRVPVVGGRGPPPP 367
             ||.....:..:..||      |....||.:.||.|
 Frog   347 -GPKTEKKKRRRGNKQAEAESNSESGEVGAQKPPEP 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fbxo42NP_611647.1 F-box_FBXO42 24..61 CDD:438882
NanM <101..307 CDD:442289 58/228 (25%)
KELCH repeat 103..148 CDD:276965 14/52 (27%)
KELCH repeat 154..209 CDD:276965 12/55 (22%)
KELCH repeat 212..257 CDD:276965 13/52 (25%)
KELCH repeat 267..314 CDD:276965 13/54 (24%)
klhdc4XP_002936149.3 NanM 59..342 CDD:442289 59/229 (26%)
KELCH repeat 119..174 CDD:276965 15/55 (27%)
KELCH repeat 177..226 CDD:276965 12/53 (23%)
KELCH repeat 231..291 CDD:276965 14/59 (24%)
Blue background indicates that the domain is not in the aligned region.

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