DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fbxo42 and Klhdc9

DIOPT Version :10

Sequence 1:NP_611647.1 Gene:Fbxo42 / 37532 FlyBaseID:FBgn0034704 Length:667 Species:Drosophila melanogaster
Sequence 2:NP_001101820.1 Gene:Klhdc9 / 360878 RGDID:1561025 Length:350 Species:Rattus norvegicus


Alignment Length:287 Identity:63/287 - (21%)
Similarity:101/287 - (35%) Gaps:78/287 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 SLVCKRWHAIV------KNLVRRSRHNLEKGLIDFRLRWEVFSQQTVNGGAGALLSFIAGRFAHS 107
            :||..||..:|      :.|...:..:...|:      |||::.:..|...       ||..:|:
  Rat    85 ALVGGRWLCVVGGWDGSRRLSTVAALDTSSGV------WEVWTAKPANCPP-------AGLSSHT 136

  Fly   108 AVR-QDNSMYVFG--GGSSSDTTFNDLWRFDLTHMRWARPVATGTY------------------- 150
            ..| .|....|.|  ||:.:...:..::...|.|       :|.||                   
  Rat   137 CTRISDREFRVSGREGGTRTQRRYGSIYTLKLDH-------STRTYCYKEEGCHTASRSGHCAAL 194

  Fly   151 -----PSPKGSASMVAWRNQLILFGGWRY--PSLHPPYQPWCLFDELHYYDLGKNRWLLRSSLSS 208
                 |.|         .:||:||||...  |.:...:.|..:.:|.........:  |.:.:||
  Rat   195 LPTAGPHP---------GHQLLLFGGCNSVGPEVAGQWSPGKIKEEAPVAPRLTEQ--LANLVSS 248

  Fly   209 -------PPPMAGHSATVHGDRMVVFGGYQIKDDFNVNSNDTWVLDLPEQ--RWWQPLFVGNTRP 264
                   |..:..||.:|.|...|:|||..:....:...||.::.|..:.  .|:.  |....|.
  Rat   249 GQGLQQGPQSLRHHSCSVVGPFAVLFGGETLTRARDTICNDLYIYDTRKSPPLWFH--FPCTDRG 311

  Fly   265 SPRYGQIQVELGRNHLLIVGGCGGANR 291
            ..|.|. :..|..:.|.:|||.|...|
  Rat   312 LKRVGH-RTCLWNDQLYLVGGFGEDGR 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fbxo42NP_611647.1 F-box_FBXO42 24..61 CDD:438882 5/17 (29%)
NanM <101..307 CDD:442289 52/229 (23%)
KELCH repeat 103..148 CDD:276965 9/47 (19%)
KELCH repeat 154..209 CDD:276965 12/63 (19%)
KELCH repeat 212..257 CDD:276965 12/46 (26%)
KELCH repeat 267..314 CDD:276965 9/25 (36%)
Klhdc9NP_001101820.1 NanM 16..350 CDD:442289 63/287 (22%)
KELCH repeat 28..76 CDD:276965
KELCH repeat 79..119 CDD:276965 8/39 (21%)
KELCH repeat 187..245 CDD:276965 12/68 (18%)
KELCH repeat 259..311 CDD:276965 13/53 (25%)
Blue background indicates that the domain is not in the aligned region.

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