DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fbxo42 and Klhdc1

DIOPT Version :10

Sequence 1:NP_611647.1 Gene:Fbxo42 / 37532 FlyBaseID:FBgn0034704 Length:667 Species:Drosophila melanogaster
Sequence 2:NP_001401856.1 Gene:Klhdc1 / 314190 RGDID:1308211 Length:406 Species:Rattus norvegicus


Alignment Length:366 Identity:79/366 - (21%)
Similarity:142/366 - (38%) Gaps:101/366 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 HNLEKGLIDFRLRWEVFSQQ-----TVNGGAGALLSFIAGRFAHSAVRQDNSMYVFGG----GSS 123
            ::::.||      |::...:     :::|..||.::   ||           :|||||    |.|
  Rat    49 YDVDSGL------WKMHLMEGELPPSMSGSCGACIN---GR-----------LYVFGGYDDKGYS 93

  Fly   124 SDTTFNDLWRFDLTHMRWARPVA-TGTYPSPKGSASMVAWRNQLILFGGWRYPSLHPPYQP---- 183
            :...|.||...|.|:: |.:... .|..|:|:...|...::::||.|||:.| ..|...|.    
  Rat    94 NRLYFVDLRTRDGTYI-WEKITKFEGQPPTPRDKLSCWVYKDRLIYFGGYGY-RRHSELQECFDV 156

  Fly   184 ----------WCLFDELHYYDLGKNRWL---LRSSLSSPPPMAGHSATVHGDRMVVFGGYQIK-- 233
                      |...:::|.:|.....|.   ::..: .|.|.|.||..|.|::..||||..::  
  Rat   157 HDASWEEQIFWGWHNDVHVFDTKTRTWSQPEIKGGV-PPQPRAAHSCAVLGNKGYVFGGRVLQTR 220

  Fly   234 -DDFNVNSNDTWVLDLPEQRWWQPLFVGNTRPSPRYGQIQVELGRNHLLIVGGCGGANRVYTDAW 297
             :|.:..:.||||       |...:.|....|..|.......:..:.|.:.||....|...:|.|
  Rat   221 MNDLHYLNLDTWV-------WSGRISVNGESPKHRSWHTLTAIADDKLFLFGGLSADNIPLSDGW 278

  Fly   298 LLDMTRDVWSWKSIAVRNKRFGAVHMWCNPGC--KVNNYLVVVGPSPNM---------------P 345
            :.::..:.|.    .:|:..:....:| :..|  |.|..:|..|...|:               .
  Rat   279 IHNIITNCWK----QLRHLPYTRPRLW-HTACLGKENEIMVFGGSKDNLLFLDTGHCNDLLIFQT 338

  Fly   346 QDFQMMK-------------QSRVPVVGGRGPPPPNPLQNV 373
            |.:.:::             :|::.::      ||..||.|
  Rat   339 QPYSLLRSCLDCIGKNAIILKSQISLL------PPKLLQQV 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fbxo42NP_611647.1 F-box_FBXO42 24..61 CDD:438882
NanM <101..307 CDD:442289 57/230 (25%)
KELCH repeat 103..148 CDD:276965 14/49 (29%)
KELCH repeat 154..209 CDD:276965 13/71 (18%)
KELCH repeat 212..257 CDD:276965 15/47 (32%)
KELCH repeat 267..314 CDD:276965 8/46 (17%)
Klhdc1NP_001401856.1 NanM 10..321 CDD:442289 71/306 (23%)
KELCH repeat 13..66 CDD:276965 3/22 (14%)
KELCH repeat 70..120 CDD:276965 19/64 (30%)
KELCH repeat 124..194 CDD:276965 13/71 (18%)
KELCH repeat 197..235 CDD:276965 14/44 (32%)
KELCH repeat 248..295 CDD:276965 9/50 (18%)
Blue background indicates that the domain is not in the aligned region.

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