DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fmr1 and FXR2

DIOPT Version :9

Sequence 1:NP_001247017.1 Gene:Fmr1 / 37528 FlyBaseID:FBgn0028734 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_004851.2 Gene:FXR2 / 9513 HGNCID:4024 Length:673 Species:Homo sapiens


Alignment Length:749 Identity:269/749 - (35%)
Similarity:395/749 - (52%) Gaps:138/749 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 GGTTS-GDME-DLLVEVRLDNGAYYKGQVTAVADDGIFVDVDGVPES-MKYPFVNVRLPP--EET 101
            ||..| ||:| .|.||||..|||:|||.|..|.:|.:.:..:...:| .:.||.:|||||  :..
Human     2 GGLASGGDVEPGLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYN 66

  Fly   102 VEVAAPIFEEGMEVEVFTRTNDRETCGWWVGIIKMRKAEIYAVAYIGFETSYTEICELGRLRAKN 166
            .|:.     ||.||||::|.|::|.||||:..::|.|.:.|.:.|...:.:|.||..|.|||..|
Human    67 KEIT-----EGDEVEVYSRANEQEPCGWWLARVRMMKGDFYVIEYAACDATYNEIVTLERLRPVN 126

  Fly   167 SNPPITAKTFYQFTLPVPEELREEAQKDGIHKEFQRTIDAGVCNYSRDLDALIVISKFEHTQKRA 231
            .||..|..:|::.|:.|||:|||....:.:||||::.:.|.....:.....|.::|..|...|||
Human   127 PNPLATKGSFFKVTMAVPEDLREACSNENVHKEFKKALGANCIFLNITNSELFILSTTEAPVKRA 191

  Fly   232 SMLKDMHFRNLSQKVMLLKRTEEAARQLETTKLMSRGNYVEEFRVRDDLMGLAIGSHGSNIQAAR 296
            |:|.|||||:|..|::|:.|.|||.:.|||:|.::.. :.|||.||:||||||||:||:|||.||
Human   192 SLLGDMHFRSLRTKLLLMSRNEEATKHLETSKQLAAA-FQEEFTVREDLMGLAIGTHGANIQQAR 255

  Fly   297 TVDGVTNIELEEKSCTFKISGETEESVQRARAMLEYAEEFFQVPRELVGKVIGKNGRIIQEIVDK 361
            .|.|||.|||.|::|||:|.|||.|:.::||:.||::|:..||||.||||||||||::|||||||
Human   256 KVPGVTAIELGEETCTFRIYGETPEACRQARSYLEFSEDSVQVPRNLVGKVIGKNGKVIQEIVDK 320

  Fly   362 SGVFRIKIAGDDEQDQNIPRELAHVPFVFIGTVESIANAKVLLEYHLSHLKEVEQLRQEKMEIDQ 426
            |||.|:::.||:  |:..|||...|||:|:||.|:|:||:.|||||||:|:||||||.|:::||:
Human   321 SGVVRVRVEGDN--DKKNPREEGMVPFIFVGTRENISNAQALLEYHLSYLQEVEQLRLERLQIDE 383

  Fly   427 QLRAI------QESSMGSTQSFPVTRRSERGYSSDIESVRSM---RGGGGGQRGRVRGRGGGGPG 482
            |||.|      ..|..||..|      .:.|||:|..|..|:   |..||...||.|||..|||.
Human   384 QLRQIGLGFRPPGSGRGSGGS------DKAGYSTDESSSSSLHATRTYGGSYGGRGRGRRTGGPA 442

  Fly   483 GGNGLNQRYHNNRRDEDDYNSRGDHQRDQQRGYNDRGGGDNTGSYRGGGGGAGGPGNNRR--GGI 545
            .|            ...|.::..:.:.:::...|..|.||.....|       |..:.||  ||.
Human   443 YG------------PSSDVSTASETESEKREEPNRAGPGDRDPPTR-------GEESRRRPTGGR 488

  Fly   546 NRRPPRNDQQNGRDYQHHNHTTEEVRETREMSSVERADSNSSYE--------------------G 590
            .|.||...:...|    :|.::        :|||.:...::.|.                    .
Human   489 GRGPPPAPRPTSR----YNSSS--------ISSVLKDPDSNPYSLLDTSEPEPPVDSEPGEPPPA 541

  Fly   591 SSRRRRRQK--------------NNNGPSNTNGAVANNNNKPQSAQQPQQQQPPAPGNKAALNAG 641
            |:||||.::              .::||:.|...: .:.::||...:.::               
Human   542 SARRRRSRRRRTDEDRTVMDGGLESDGPNMTENGL-EDESRPQRRNRSRR--------------- 590

  Fly   642 DASKQNSGNANAAGGASKPKDASRNGDKQQAGTQQQQPSQVQQQQAAQQQQPKPRRNKNRSNNHT 706
               ::|.||..         |.|.:||:|....    ...:.:.::..:|:|...|.|...::.:
Human   591 ---RRNRGNRT---------DGSISGDRQPVTV----ADYISRAESQSRQRPPLERTKPSEDSLS 639

  Fly   707 DQ-----------PSGQQQLAENVKKEGLVNGTS 729
            .|           ||...:|:..::...:|||.|
Human   640 GQKGDSVSKLPKGPSENGELSAPLELGSMVNGVS 673

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fmr1NP_001247017.1 Agenet 107..163 CDD:214798 22/55 (40%)
KH_1 271..330 CDD:278442 38/58 (66%)
KH_1 337..404 CDD:278442 41/66 (62%)
FXMRP1_C_core 407..528 CDD:289039 44/129 (34%)
FXR2NP_004851.2 Agenet 72..127 CDD:310325 23/54 (43%)
KH 230..290 CDD:197652 38/59 (64%)
KH_1 295..362 CDD:306517 42/68 (62%)
FXMRP1_C_core 364..473 CDD:315008 44/126 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 389..673 71/352 (20%)
FXR_C1 510..577 CDD:318344 10/67 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165158211
Domainoid 1 1.000 88 1.000 Domainoid score I7941
eggNOG 1 0.900 - - E1_2C9YP
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 385 1.000 Inparanoid score I2044
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002239
OrthoInspector 1 1.000 - - otm41158
orthoMCL 1 0.900 - - OOG6_102557
Panther 1 1.100 - - LDO PTHR10603
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1481
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1211.750

Return to query results.
Submit another query.