DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fmr1 and fxr2

DIOPT Version :9

Sequence 1:NP_001247017.1 Gene:Fmr1 / 37528 FlyBaseID:FBgn0028734 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_956505.2 Gene:fxr2 / 393180 ZFINID:ZDB-GENE-040426-943 Length:676 Species:Danio rerio


Alignment Length:743 Identity:281/743 - (37%)
Similarity:392/743 - (52%) Gaps:129/743 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 MEDLLVEVRLDNGAYYKGQVTAVADDGIFV--DVDGVPESMKYPFVNVRLPP--EETVEVAAPIF 109
            |:.|.||||..|||:|||.:..|.:|.:.:  :.:..|| .:.||.:|||||  :...::.    
Zfish     1 MDGLAVEVRGSNGAFYKGFIKDVHEDSLTIVFENNWQPE-RQLPFSDVRLPPPTDYHKDIC---- 60

  Fly   110 EEGMEVEVFTRTNDRETCGWWVGIIKMRKAEIYAVAYIGFETSYTEICELGRLRAKNSNPPITAK 174
             ||.||||::|.|::|.||||:..::|.|.|.|.:.|...:.:|.||....|:|..|.|.|....
Zfish    61 -EGDEVEVYSRANEQEPCGWWLARVRMMKGEFYVIEYAACDATYNEIVTSERIRPVNPNSPSAQN 124

  Fly   175 TFYQFTLPVPEELREEAQKDGIHKEFQRTIDAGVCNYSRDLDALIVISKFEHTQKRASMLKDMHF 239
            :||:..:.|||:||:....:.|||:|::.|.|....|:.....|||:|..|.|.|||.:|.||||
Zfish   125 SFYKVPIAVPEDLRDICLTENIHKDFRKAIGANCIFYNTSTHQLIVLSTNESTVKRAGLLSDMHF 189

  Fly   240 RNLSQKVMLLKRTEEAARQLETTKLMSRGNYVEEFRVRDDLMGLAIGSHGSNIQAARTVDGVTNI 304
            |::..|:||:.|.|||.:.|||:|.::.. |.||.:||:|||||||||||:|||.||.|.|||.|
Zfish   190 RSIRTKLMLMSRNEEATKHLETSKQLASA-YQEEVKVREDLMGLAIGSHGANIQQARKVPGVTAI 253

  Fly   305 ELEEKSCTFKISGETEESVQRARAMLEYAEEFFQVPRELVGKVIGKNGRIIQEIVDKSGVFRIKI 369
            ||||:||||:|.|||.|:|::||..||:.|:.|.|||.||||||||||:|||||||||||.|::|
Zfish   254 ELEEESCTFRIYGETPEAVKQARTYLEFKEDSFPVPRNLVGKVIGKNGKIIQEIVDKSGVVRVRI 318

  Fly   370 AGDDEQDQNIPRE----------------LAHVPFVFIGTVESIANAKVLLEYHLSHLKEVEQLR 418
            .||:  |:.:|||                ...|||:|:||.|:|:||:.|||||:::|:||||||
Zfish   319 EGDN--DKKLPREEGGRQGAGRDNIVSSQEGTVPFIFVGTKENISNAQALLEYHVAYLQEVEQLR 381

  Fly   419 QEKMEIDQQLRAI------QESSMGSTQSFPVTRRSERGYSSDIESVRSMR-----GGGGGQRGR 472
            .|:::||:|||.|      ..|..||    .|....||||.:| ||..|::     ||.|     
Zfish   382 LERLQIDEQLRQIGVGYRAPPSRSGS----GVAGERERGYLTD-ESTNSLQTTRTYGGRG----- 436

  Fly   473 VRGRGGGGPGGGNGLNQRYHNNRRDEDDYNSRGDHQ-RDQQRGYNDRG---GGDNTGSYRGGGGG 533
             |||.......|.|.|....|....||    .||.: |.:..|.:|||   ||...||..|.|.|
Zfish   437 -RGRKPNNTYSGYGTNSEMSNASETED----LGDRESRPKGVGADDRGSKRGGRGRGSSAGRGRG 496

  Fly   534 AGGPGN-NRRGGINRRPPRN-------DQQNGRDYQHHNHTTEEVRETREMSSVERADSNSSYEG 590
            ..||.| |....:.|.|..|       :.:.|.|                      .|::.|..|
Zfish   497 GPGPRNINTISSVLRDPDSNPYSLLEGEGEQGGD----------------------TDASESMGG 539

  Fly   591 SSRRR--RRQKNNNGPS-------NTNGAVANNNNKPQSAQQPQQQQPPAPGNKAALNAGDASKQ 646
            ..|||  ||::|:..||       .::|..|.:.|..:...:||::              :.|::
Zfish   540 IDRRRRSRRRRNDLEPSLMDAAANESDGQGATSENGLEEEGRPQRR--------------NRSRR 590

  Fly   647 NSGNANAAGGASKPKDASRNGDKQQ---AGTQQQQPSQVQQQQAAQQQQP---KPRRNKNRSNNH 705
            ....||      :|:..|.:.|:|.   |....:..||.:|....::..|   .|:.|....:..
Zfish   591 RRNRAN------RPEGGSTSRDRQPVTVADFISRAESQSRQNLPGKEANPHVSHPKENGTSVSKE 649

  Fly   706 TDQPSGQQQLAENVKKEG----LVNGTS 729
            ...|| ::..:..|...|    :|||.|
Zfish   650 ERTPS-KRSPSNGVASPGEALAMVNGVS 676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fmr1NP_001247017.1 Agenet 107..163 CDD:214798 22/55 (40%)
KH_1 271..330 CDD:278442 41/58 (71%)
KH_1 337..404 CDD:278442 43/82 (52%)
FXMRP1_C_core 407..528 CDD:289039 50/135 (37%)
fxr2NP_956505.2 Agenet 62..120 CDD:283330 24/57 (42%)
KH 219..280 CDD:197652 42/60 (70%)
KH-I 286..368 CDD:238053 44/83 (53%)
FXMRP1_C_core 370..>471 CDD:289039 42/115 (37%)
FXR_C1 504..577 CDD:292714 20/94 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594093
Domainoid 1 1.000 85 1.000 Domainoid score I8128
eggNOG 1 0.900 - - E1_2C9YP
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 387 1.000 Inparanoid score I1969
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002239
OrthoInspector 1 1.000 - - otm25460
orthoMCL 1 0.900 - - OOG6_102557
Panther 1 1.100 - - LDO PTHR10603
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1481
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.750

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