DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30280 and Tnn

DIOPT Version :10

Sequence 1:NP_611641.6 Gene:CG30280 / 37522 FlyBaseID:FBgn0050280 Length:288 Species:Drosophila melanogaster
Sequence 2:NP_001100659.2 Gene:Tnn / 304913 RGDID:1306002 Length:1562 Species:Rattus norvegicus


Alignment Length:221 Identity:82/221 - (37%)
Similarity:126/221 - (57%) Gaps:17/221 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 YPTSC----LTSGDLENGLHTLKVPG--LSPFQVYCENQLAGPGWIVIQKRFSGNLSFFRNWKEY 124
            :|:.|    ..:....:||:|:.:.|  ..|.||||:....|.||||.|:|.:|.|.||:.|:.|
  Rat  1328 HPSDCSQVQQNTNAAASGLYTIYLNGDASRPMQVYCDMDTDGGGWIVFQRRNTGQLDFFKRWRSY 1392

  Fly   125 KNGFGNLMDEYFLGLEKIRALT--ALEPHELYVHLEDFDDTIKHAKFDEFAIGNEDDDYAMNTLG 187
            ..|||:.|.|::|||:|:..||  ....:|:...|:..::: .:|.:|.|.:.:..:.|.: ::|
  Rat  1393 VEGFGDPMKEFWLGLDKLHNLTTGTTTRYEVRADLQTANES-AYAVYDFFQVASSKERYKL-SVG 1455

  Fly   188 KYSGTAGDSLRSHRKMKFSTYDRDNDHEFNKNCAFYYLGGWWYNACLDSNLNGQYMPGGKYEESL 252
            ||.|||||:|..|...||:|:|||||...: |||..:.|||||..|..:|      |.|||.|:.
  Rat  1456 KYRGTAGDALTYHNGWKFTTFDRDNDIALS-NCALTHHGGWWYKNCHLAN------PNGKYGETK 1513

  Fly   253 FARGMCWRSWRGHNYGYRVTQMMIRP 278
            .:.|:.|..|:||.:.....::.|||
  Rat  1514 HSEGVNWEPWKGHEFSIPYVELKIRP 1539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30280NP_611641.6 FReD 65..279 CDD:238040 82/221 (37%)
TnnNP_001100659.2 EGF_2 142..166 CDD:400365
C_rich_MXAN6577 <171..>237 CDD:469225
EGF_Tenascin 171..198 CDD:480934
EGF_2 236..259 CDD:400365
fn3 264..332 CDD:394996
fn3 359..434 CDD:394996
FN3 444..529 CDD:238020
FN3 532..608 CDD:214495
FN3 582..1094 CDD:442628
fn3 972..1049 CDD:394996
FN3 1060..1136 CDD:214495
FN3 1148..1224 CDD:214495
fn3 1236..1309 CDD:394996
FReD 1327..1540 CDD:238040 82/221 (37%)
Blue background indicates that the domain is not in the aligned region.

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