DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG30280 and Tnr

DIOPT Version :10

Sequence 1:NP_611641.6 Gene:CG30280 / 37522 FlyBaseID:FBgn0050280 Length:288 Species:Drosophila melanogaster
Sequence 2:NP_037177.2 Gene:Tnr / 25567 RGDID:3886 Length:1358 Species:Rattus norvegicus


Alignment Length:256 Identity:101/256 - (39%)
Similarity:141/256 - (55%) Gaps:17/256 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 LEAIYEQAENA--LSTLQESLLQLETNGTLNTSPDVI-YPTSC---LTSGDLENGLHTLKVPG-L 88
            ||.:.|..:..  |...||:.....|:....|...|. :|..|   |.:||..:|::|:.:.| |
  Rat  1096 LEGLSENTDYTVLLQAAQEATRSSLTSTIFTTGGRVFSHPQDCAQHLMNGDTLSGVYTIFLNGEL 1160

  Fly    89 S-PFQVYCENQLAGPGWIVIQKRFSGNLSFFRNWKEYKNGFGNLMDEYFLGLEKIRALTALEPHE 152
            | ..||||:....|.||||.|:|.:|...|||.|.:|:.|||||.||::|||:.|..:||...:|
  Rat  1161 SHKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNLEDEFWLGLDNIHRITAQGRYE 1225

  Fly   153 LYVHLEDFDDTIKHAKFDEFAIGNEDDDYAMNTLGKYSGTAGDSLRSHRKMKFSTYDRDNDHEFN 217
            |.|.:.|..:.: .|.:|:||:.:....|.:. :|.|:|||||||..|:...|||.|||||....
  Rat  1226 LRVDMRDGQEAV-FAYYDKFAVEDSRSLYKLR-IGGYNGTAGDSLSYHQGRPFSTEDRDNDVAVT 1288

  Fly   218 KNCAFYYLGGWWYNACLDSNLNGQYMPGGKYEESLFARGMCWRSWRGHNYGYRVTQMMIRP 278
             |||..|.|.|||..|..:|||      |||.||..::|:.|..|:||.:.....:|.:||
  Rat  1289 -NCAMSYKGAWWYKNCHRTNLN------GKYGESRHSQGINWYHWKGHEFSIPFVEMKMRP 1342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30280NP_611641.6 FReD 65..279 CDD:238040 92/220 (42%)
TnrNP_037177.2 EGF_Tenascin 203..231 CDD:376143
C_rich_MXAN6577 207..317 CDD:469225
EGF_Tenascin 235..261 CDD:480934
FN3 355..934 CDD:442628
fn3 954..1026 CDD:394996
FN3 1042..1127 CDD:238020 7/30 (23%)
FReD 1134..1342 CDD:238040 90/216 (42%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.