DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30280 and Tnc

DIOPT Version :10

Sequence 1:NP_611641.6 Gene:CG30280 / 37522 FlyBaseID:FBgn0050280 Length:288 Species:Drosophila melanogaster
Sequence 2:XP_008761976.1 Gene:Tnc / 116640 RGDID:621057 Length:2202 Species:Rattus norvegicus


Alignment Length:252 Identity:90/252 - (35%)
Similarity:139/252 - (55%) Gaps:22/252 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 YEQAENALS-TLQESLLQLETNGTLNTSPDVIYP-----TSCLTSGDLENGLHTLKVPG--LSPF 91
            |.....||| :|:..|:|     |:.|:..::||     :..:.:||..:||:|:.:.|  ....
  Rat  1952 YTARIQALSGSLRSKLIQ-----TIFTTIGLLYPFPRDCSQAMLNGDTTSGLYTIYINGDKTQAL 2011

  Fly    92 QVYCENQLAGPGWIVIQKRFSGNLSFFRNWKEYKNGFGNLMDEYFLGLEKIRALTALEPHELYVH 156
            :|||:....|.||||..:|.:|...|:||||.|..|||:..:|::|||:.:..:||...:||.|.
  Rat  2012 EVYCDMTSDGGGWIVFLRRKNGREDFYRNWKAYAAGFGDRREEFWLGLDNLSKITAQGQYELRVD 2076

  Fly   157 LEDFDDTIKHAKFDEFAIGNEDDDYAMNTLGKYSGTAGDSLRSHRKMKFSTYDRDNDHEFNKNCA 221
            |:|..:: .:|.:|.|::|:....|.:...| ||||||||:..|....|||||:|.|.... |||
  Rat  2077 LQDHGES-AYAVYDRFSVGDAKSRYKLKVEG-YSGTAGDSMNYHNGRSFSTYDKDTDSAIT-NCA 2138

  Fly   222 FYYLGGWWYNACLDSNLNGQYMPGGKYEESLFARGMCWRSWRGHNYGYRVTQMMIRP 278
            ..|.|.:||..|...||.      |:|.::..::|:.|..|:||.|..:..:|.:||
  Rat  2139 LSYKGAFWYKNCHRVNLM------GRYGDNNHSQGVNWFHWKGHEYSIQFAEMKLRP 2189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30280NP_611641.6 FReD 65..279 CDD:238040 81/221 (37%)
TncXP_008761976.1 EGF_Tenascin 190..217 CDD:480934
EGF_Tenascin 252..280 CDD:480934
EGF_Tenascin 284..311 CDD:480934
EGF_Tenascin 315..341 CDD:480934
EGF_2 350..372 CDD:400365
EGF_2 380..403 CDD:400365
EGF_Tenascin 408..435 CDD:480934
EGF_Tenascin 439..466 CDD:480934
EGF_Tenascin 470..496 CDD:480934
EGF_Tenascin 501..528 CDD:480934
EGF_2 535..558 CDD:400365
EGF_Tenascin 563..589 CDD:480934
EGF_Tenascin 594..621 CDD:480934
FN3 624..710 CDD:238020
fn3 713..793 CDD:394996
FN3 <822..1234 CDD:442628
fn3 1257..1336 CDD:394996
fn3 1348..1417 CDD:394996
fn3 1437..1509 CDD:394996
fn3 1534..1606 CDD:394996
fn3 1622..1702 CDD:394996
FN3 <1719..>1958 CDD:442628 1/5 (20%)
fn3 1889..1961 CDD:394996 3/8 (38%)
Fibrinogen_C 1981..2190 CDD:395095 79/218 (36%)
Blue background indicates that the domain is not in the aligned region.

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