DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vrp1 and wipf2a

DIOPT Version :9

Sequence 1:NP_001097406.1 Gene:Vrp1 / 37521 FlyBaseID:FBgn0243516 Length:852 Species:Drosophila melanogaster
Sequence 2:XP_005155816.1 Gene:wipf2a / 563976 ZFINID:ZDB-GENE-121219-6 Length:450 Species:Danio rerio


Alignment Length:836 Identity:190/836 - (22%)
Similarity:241/836 - (28%) Gaps:424/836 - (50%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAIPPPPGPPPPPGPPPPPAMG-----GLKLGGAGGADARSALLSSIQKGTKLKKTTTV-DKSGP 59
            |.|||   |||||||||||...     ..|| ....|..|.||||.|.||.||||||.| |:|.|
Zfish     1 MPIPP---PPPPPGPPPPPTFSQANTTAPKL-NRDEAKGRGALLSDICKGAKLKKTTGVNDRSAP 61

  Fly    60 AL---SGKVCGGDGGAGIGAKRTLNNNTSTSNHNNSSSSSNGLG--NGTPKLGGLFEGLSQMPKL 119
            .:   .|:..||.||.|.|          :|..........|.|  :|...:||||.|  .:|||
Zfish    62 VIEKAGGRSGGGGGGGGGG----------SSGGGGGGGGGGGFGGSSGPKAMGGLFSG--GVPKL 114

  Fly   120 KPVNGIRATPSAGSAATTTSKSTTNSSAQQRSNSPPAATSASNASNGPMDFNTELTKHLTLKRQK 184
            :||.                    :||..:.:..||.:..|                        
Zfish   115 RPVG--------------------DSSVGRSALRPPGSRPA------------------------ 135

  Fly   185 QQQQQQPQPPTNNTHINATEANLRTNRGPPPQPPKSANSNDSILERMNIPRTAPTPPFGNSSSVK 249
                                                            :||              
Zfish   136 ------------------------------------------------VPR-------------- 138

  Fly   250 AASPTLSDSGSNSSGSGGGSGSVKSKAANLNISLGNSFVNSSKSTVSASTASLNSSLTSSTGSVR 314
                                            .|.||.|:                         
Zfish   139 --------------------------------GLSNSEVD------------------------- 146

  Fly   315 NLAPNKSTLFGGSSGSSSGSSSGGGYASVHKSSPPSTADSTPSVTPTPPPLQLPMKPAISFGKPN 379
                              |||.|.|    .::|||   :...:..|:.|.:..|..|:.|....|
Zfish   147 ------------------GSSRGDG----SRTSPP---EQQRNHRPSLPDVSKPSVPSSSSKPTN 186

  Fly   380 FAPKPPGLNQLAMANGQQRPAVTRHHSMKSPRSPPAAGIVNGLVFPTQQHLGTLRGPLQFHGSES 444
            .||.||                           ||.....|             |||        
Zfish   187 SAPPPP---------------------------PPFNRAGN-------------RGP-------- 203

  Fly   445 SSPNTSAGSMRCAPNPPKSRPSVK-PPPPPTPARSFSNTNLNNIGGSTMFSAVNTALIQSSAISS 508
            ||....:|..|..|.||...|..| |||||:|||.          |:.....:::....||:|||
Zfish   204 SSAQQGSGQSRDKPFPPPPPPVSKGPPPPPSPARE----------GTPRHPPLSSRSSSSSSISS 258

  Fly   509 ---QAPSPPITQPPSSSSS--------SNSVAALRDQFRGGAGMSNGAPSPPLPPT------PAP 556
               ..|.||..|||:::..        .||   |..:..|.|...:.||.|| ||:      |.|
Zfish   259 GNAPPPPPPYRQPPAANGDPAPELPQRRNS---LNRRGHGNANARSQAPPPP-PPSQQNRRPPPP 319

  Fly   557 SSNPSSASASPKSLLRDNVKPIILNGGPLNPPAPPPHRSCP--PPPPPQRQSSNQDRVKYWIDKT 619
            :.:|...|.:|:.     ..||..||....||.|||:|..|  ...||.|               
Zfish   320 ARDPVGRSTAPQV-----PPPISRNGIRETPPPPPPYRGGPQTSSEPPSR--------------- 364

  Fly   620 VYSFKKILHINRQGRHSGESVKVINMLNSKRNGGSGSGSAPVPPQRHSSIRPNAPSTPPT---HM 681
                .|...::..||.|                   ||.||.||             ||.   |.
Zfish   365 ----SKAPPLSSSGRQS-------------------SGHAPPPP-------------PPLRNGHT 393

  Fly   682 ANASHQFGSSSGLSSGSGAGAAASVGRLVNDLETKFGKRFHNVTEFPKPPPFLNIQKVYPSRTFK 746
            ::||..|                     .:|.|:|:.  ||.:.:||.|..:.|..|.|||    
Zfish   394 SSASRSF---------------------ADDFESKYD--FHPIEDFPPPEEYRNFPKSYPS---- 431

  Fly   747 ATNAPGNSSVNNNNNAVASNNNTTSNPNPGGFGGGLAPVLKPAHAPLKKHRAPAPP 802
                      :|:||.|..                         ||      ||||
Zfish   432 ----------HNHNNRVRG-------------------------AP------PAPP 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vrp1NP_001097406.1 None
wipf2aXP_005155816.1 WH2 35..59 CDD:280384 16/23 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4462
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
21.860

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