DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vrp1 and wipf2b

DIOPT Version :9

Sequence 1:NP_001097406.1 Gene:Vrp1 / 37521 FlyBaseID:FBgn0243516 Length:852 Species:Drosophila melanogaster
Sequence 2:NP_001002165.1 Gene:wipf2b / 415255 ZFINID:ZDB-GENE-040625-182 Length:441 Species:Danio rerio


Alignment Length:786 Identity:179/786 - (22%)
Similarity:234/786 - (29%) Gaps:387/786 - (49%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAIPPPPGPPPPPGPPPPPAMGGL-----KLGGAGGADARSALLSSIQKGTKLKKTTTV-DKSGP 59
            |.||||  ||||.||||||.:...     || ....|..|.||||.|.||.:|||||.| |:|.|
Zfish     1 MPIPPP--PPPPAGPPPPPTLSQANTTPPKL-SRDEAKGRGALLSDICKGARLKKTTGVNDRSAP 62

  Fly    60 ALSGKVCGGDGGAGIGAKRTLNNNTSTSNHNNSSSSSNGLGNGTP--KLGGLFEGLSQMPKLKPV 122
            .:. |..||.||.                      ||:|.|:..|  .:||||:|  .:|||:||
Zfish    63 LIE-KPKGGGGGV----------------------SSSGGGSSAPVQPVGGLFQG--GVPKLRPV 102

  Fly   123 NGIRATPSA------GSAATTT--SKSTTNSSAQQRS---NSPPAATSASNASNGPMDFNTELTK 176
            ....|..||      .|||...  |:...:|.:||.|   :|.|...|..:.|..|...|:    
Zfish   103 GDGSAGRSALHPHGTRSAAPRPPGSQEDPDSPSQQVSPPESSRPQRPSLPDLSRSPAGGNS---- 163

  Fly   177 HLTLKRQKQQQQQQPQPPTNNTHINATEANLRTNRGPPPQPPKS--ANSNDSILERMNIP---RT 236
                            |.|...|         ::..|||.||.|  .|:..:.|::.|.|   |.
Zfish   164 ----------------PSTGMKH---------SSSAPPPPPPMSRRGNAPPAPLQKANAPLYNRE 203

  Fly   237 APTPPFGNSSSVKAASPTLSDSGSNSSGSGGGSGSVKSKAANLNISLGNSFVNSSKSTVSASTAS 301
            .|.||                                                            
Zfish   204 KPLPP------------------------------------------------------------ 208

  Fly   302 LNSSLTSSTGSVRNLAPNKSTLFGGSSGSSSGSSSGGGYASVHKSSPPSTADSTPSVTPTPPPLQ 366
                    |...|..:|                      |.|.:::||      |.|.|.|.|..
Zfish   209 --------TPEQRGPSP----------------------APVRENAPP------PPVKPPPSPAS 237

  Fly   367 LPMKPAISFGKPNFAPKPPGLNQLA-MANGQQRPA-------VTRHHSMKSPRSPPAAGIVNGLV 423
               ..:.|....:.||.||...|.: ::||...|.       ..||:|:.  :.|.|||..    
Zfish   238 ---SRSSSSSSSSLAPPPPPYRQQSGLSNGPSSPVNEAAPELPQRHNSLS--KKPSAAGHT---- 293

  Fly   424 FPTQQHLGTLRGPLQFHGSESSSPNTSAGSMRCAPNPPKSRPSVKPPPPPTPARSFSNTNLNNIG 488
             ||:.|.                             ||       |||.|||             
Zfish   294 -PTRGHA-----------------------------PP-------PPPSPTP------------- 308

  Fly   489 GSTMFSAVNTALIQSSAISSQAPSPPITQPPSSSSSSNSVAALRDQFRGGAGMSNGAPSPPLPPT 553
                              .:..|.||..:||.               ||.|        ||:|..
Zfish   309 ------------------QAGRPPPPAREPPG---------------RGAA--------PPVPGQ 332

  Fly   554 PAPSSNPSSASASPKSLLRDNVKPIILNGGPLNPPAPPPHRSCPPPPPPQRQSSNQDRVKYWIDK 618
            |:.:.             ||               |||     |||||.:...::.|        
Zfish   333 PSRNG-------------RD---------------APP-----PPPPPYRTHGTSSD-------- 356

  Fly   619 TVYSFKKILHINRQGRHSGESVKVINMLNSKRNGGSGSGSAPVPPQRHSSIRPNAPSTPPTHMAN 683
                                              ....|..|.||.|    .|..|..||..:.|
Zfish   357 ----------------------------------APSRGKPPPPPSR----TPAGPPPPPPPIRN 383

  Fly   684 ASHQFGSSSGLSSGSGAGAAASVGR-LVNDLETKFGKRFHNVTEFPKPPPFLNIQKVYPSRTFKA 747
            ..                  .|:.| .|:|.|:|:.  ||.:.:||.|..:.:..|:|||:..:|
Zfish   384 GH------------------TSISRSFVDDFESKYS--FHPLDDFPPPEEYRHFTKIYPSKANRA 428

  Fly   748 T--NAP 751
            .  .||
Zfish   429 VMRGAP 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vrp1NP_001097406.1 None
wipf2bNP_001002165.1 WH2 36..60 CDD:280384 15/23 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4462
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
21.860

Return to query results.
Submit another query.