DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vrp1 and wip-1

DIOPT Version :9

Sequence 1:NP_001097406.1 Gene:Vrp1 / 37521 FlyBaseID:FBgn0243516 Length:852 Species:Drosophila melanogaster
Sequence 2:NP_741122.2 Gene:wip-1 / 175681 WormBaseID:WBGene00020094 Length:362 Species:Caenorhabditis elegans


Alignment Length:647 Identity:149/647 - (23%)
Similarity:188/647 - (29%) Gaps:324/647 - (50%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 IPPPPGPPPPPGPPPPPAMGGLKLGGAGGADARSALLSSIQKGTKLKKTTTVDKSGPALSGKVCG 67
            :||||.|||||.||||||..    .....::||:|||..|.||.|||||.|.|:|.|:: |||.|
 Worm     1 MPPPPPPPPPPPPPPPPAAS----APPPSSNARNALLGDIHKGLKLKKTVTNDRSAPSV-GKVVG 60

  Fly    68 GDGGAGIGAKRTLNNNTSTSNHNNSSSSSNGLGNGTPK----LGGLF-EGLSQMPKLKPVNGIRA 127
            ..|                |:.|.:|.:.||.....|:    ||||| .|:...|....:.  ||
 Worm    61 SSG----------------SSSNGNSGNGNGPAAKPPQMSGGLGGLFANGMPMKPSENKIR--RA 107

  Fly   128 TPSAGSAATTTSKSTTNSSAQQRSNSPPAATSASNASNGPMDFNTELTKHLTLKRQKQQQQQQPQ 192
            |.|.|                    .||.|:||                                
 Worm   108 TTSIG--------------------PPPTASSA-------------------------------- 120

  Fly   193 PPTNNTHINATEANLRTNRGPPPQPPKSANSNDSILERMNIPRTAPTPPFGNSSSVKAASPTLSD 257
            ||.                 |||                     ||.|                 
 Worm   121 PPV-----------------PPP---------------------APVP----------------- 130

  Fly   258 SGSNSSGSGGGSGSVKSKAANLNISLGNSFVNSSKSTVSASTASLNSSLTSSTGSVRNLAPNKST 322
                         :|:.|                                            |.:
 Worm   131 -------------AVEGK--------------------------------------------KPS 138

  Fly   323 LFGGSSGSSSGSSSGGGYASVHKSSPPSTADSTPSVTPTPPPLQLPMKPAISFGKPNFAPKPPGL 387
            :...||.|..|::|         |:||.        .|.|||:.:|.      .||...|.||  
 Worm   139 IVSSSSFSHHGATS---------SAPPP--------PPPPPPVSVPS------SKPTPPPPPP-- 178

  Fly   388 NQLAMANGQQRPAVTRHHSMKSPRSPPAAGIVNGLVFPTQQHLGTLRG--PLQFH--GSESSSPN 448
                   .||:|      |.:|.|..          |.|.:.|.....  |..:.  ||....|.
 Worm   179 -------AQQKP------SFQSDREQ----------FRTMRPLRPANDVKPTMYRRSGSSEDIPQ 220

  Fly   449 TSAGSMRCAP-NPPKSRPSVKPPPPPTPARSFSNTNLNNIGGSTMFSAVNTALIQSSAISSQAPS 512
            .::.:....| .||.:||:..|||.|||:                 .|..::..||.|||.....
 Worm   221 ATSATRLARPLAPPPARPAAPPPPVPTPS-----------------IAQMSSRFQSPAISRTLDD 268

  Fly   513 PPITQPPSSSSSSNSVAALRDQFRGGAGMSNGAPSPPLPPTPAPSSNPSSASASPKSLLRDNVKP 577
            .|  .||...:|..||                ||:....|.|..||...|.||||...       
 Worm   269 AP--PPPPRIASKTSV----------------APTSSRAPLPPSSSFAPSISASPAPA------- 308

  Fly   578 IILNGGPLNPPAPPPHRSCPPP----------------------------PPPQRQSSNQDR 611
                     ||.|||..:.|.|                            |||.:.||...|
 Worm   309 ---------PPPPPPQAASPYPGMKSTATVSANVPFHPLNRFHFLPLSQLPPPPKVSSGSIR 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vrp1NP_001097406.1 None
wip-1NP_741122.2 WH2 28..45 CDD:128542 11/16 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159766
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006482
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.930

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