DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vrp1 and wipf1a

DIOPT Version :9

Sequence 1:NP_001097406.1 Gene:Vrp1 / 37521 FlyBaseID:FBgn0243516 Length:852 Species:Drosophila melanogaster
Sequence 2:NP_001121767.2 Gene:wipf1a / 100005341 ZFINID:ZDB-GENE-080204-101 Length:520 Species:Danio rerio


Alignment Length:792 Identity:182/792 - (22%)
Similarity:241/792 - (30%) Gaps:326/792 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PPGPPPPPGPPPPPAMGGLKLGGAGGAD--ARSALLSSIQKGTKLKKTTTVDKSGPALSGKVCGG 68
            |..|||||||||..:....:.......:  .|:||||.|.||.:||||.|.|:|||.|.....||
Zfish     2 PGPPPPPPGPPPTFSQANTEKPNLSRNEQQGRNALLSDINKGARLKKTITNDRSGPVLDKPKGGG 66

  Fly    69 DGGAGIGAKRTLNNNTSTSNHNNSSSSSNGLGNG-TPKLGGLFEGLSQMPKLKPV----NGIRA- 127
            .||.|.|                    ..|.|.| :..:||||:|  .||:||..    ..:|| 
Zfish    67 GGGGGGG--------------------GGGFGGGASGGMGGLFQG--GMPRLKSAGNRDGNVRAP 109

  Fly   128 -TPSAGSAATTTSKSTTNSSAQQRSNSPPAATSASNASNGPMDFNTELTKHLTLKRQKQQQQQQP 191
             .||.|       :....||...|..:|.:...:.....||                     .:|
Zfish   110 MPPSGG-------RFPAPSSPAGRFPAPSSPAGSRPPVPGP---------------------GRP 146

  Fly   192 QPPTNNTHINATEANLRTNRGPPPQPPKSANSNDSILERMNIPRTAPTPPFGNSSSVKAASPTLS 256
            .|               ...||||.|..|.:...|      .|...|..|.|.......|.|..:
Zfish   147 SP---------------GRAGPPPIPSSSRSPQHS------SPGGPPPIPGGRPQGSSPAPPPPN 190

  Fly   257 DSGSNSSGSGGGSGSVKSKAANLNISLGNSFVNSSKSTVSASTASLNSSLTSSTGSVRNLAPNKS 321
            .||..:                       ||....:.:.|:...                .|.:|
Zfish   191 SSGRRT-----------------------SFPQPPRESQSSFPP----------------PPRES 216

  Fly   322 TLFGGSSGSSSGSSSGGGYASVHKSSPPSTADSTPSVTPTPPPLQ--LPMKPAISFGKPNFAPKP 384
            |.                       .||....|.|     |||.:  .|..|..|    :|.|.|
Zfish   217 TF-----------------------PPPPRESSFP-----PPPRESSFPPPPRES----SFPPPP 249

  Fly   385 PGLNQLAMANGQQRPAVTRHHSMKSPRSPPAAGIVNGLVFPTQQHLGTLRGPLQFHGSESSSPNT 449
                                  .:|...||                     |.:.|.|....|..
Zfish   250 ----------------------RESSFPPP---------------------PRESHSSFPPPPRE 271

  Fly   450 SAGSMRCAPNPPKSRPSV-----KP-----PPPPTPARSFSNTNLNNIGGSTMFSAVNTALIQSS 504
            |..|....|.|...||.:     :|     ||||.||           ||            :..
Zfish   272 SQSSFPPPPIPASGRPPLPSIPGRPQADDFPPPPPPA-----------GG------------RRE 313

  Fly   505 AISSQAPSPPITQPPSSSSSSNSVAALRDQFRGGAGMSNGAPS-PP----LPPTPAPSSNP--SS 562
            :.....|.|    ||..|:....:.:.|.       |.|..|| ||    .||.| |||..  ||
Zfish   314 SFCRDGPLP----PPPPSTECKPMGSQRP-------MGNAPPSLPPGRGGAPPIP-PSSRDELSS 366

  Fly   563 ASASPKSLLRDNVKPIILNGGPLNPPAPPPHRSCPPPPPPQRQSSNQDRVKYWIDKTVYSFKKIL 627
            ..||..||                ||.|||.|:.|.||||.                        
Zfish   367 RGASRNSL----------------PPPPPPGRTSPLPPPPS------------------------ 391

  Fly   628 HINRQGRHSGESVKVINMLNSKRNGGS-GSGSAPVPPQ-------RHSSI----RPNAPSTPPTH 680
              |.:...:|:|.:..::......||: |....||||.       |.|.:    .|..||.||..
Zfish   392 --NERPPPTGKSARSGSLPPPPPAGGNRGGAPPPVPPPNRPGGSGRPSLVPDPPAPRVPSFPPAP 454

  Fly   681 MANASHQFGSSSGLSSGSGAGAAASVGRLVNDLETKFGKR--FHNVTEFPKPPPFLNIQKVYPSR 743
            .:::.:.:....                  ..:..::|.|  ||:::|.|.|.|:::..|.|||:
Zfish   455 PSDSINGYQCPP------------------PPVSDEWGMRFSFHSLSELPPPEPYVSFSKSYPSK 501

  Fly   744 T----FKATNAP 751
            :    .|...||
Zfish   502 SGGKGIKDRGAP 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vrp1NP_001097406.1 None
wipf1aNP_001121767.2 WH2 32..55 CDD:280384 14/22 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582295
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006482
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.930

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