DRSC/TRiP Functional Genomics Resources

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Protein Alignment Plekhm1 and Rubcnl

DIOPT Version :9

Sequence 1:NP_611639.1 Gene:Plekhm1 / 37520 FlyBaseID:FBgn0034694 Length:720 Species:Drosophila melanogaster
Sequence 2:XP_008769127.1 Gene:Rubcnl / 290403 RGDID:1304929 Length:681 Species:Rattus norvegicus


Alignment Length:729 Identity:171/729 - (23%)
Similarity:275/729 - (37%) Gaps:164/729 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 CEQTSALCTTLEALFLHGLKDSFLSATFNVIAGDVERRPEPSFWAPCMVFMHKQVIEQVQGLSQI 113
            ||:||           |..:|:  ....:|:..|     :|:......:..||........:.|.
  Rat    43 CERTS-----------HAFQDA--DGLPSVLDTD-----QPACQLDVRLVRHKASWINPLCVQQP 89

  Fly   114 TSETGQCRAWVRQSLNESVFSSYLNNMRKNGSALSQYYKRNALMRDSEGLETAAKIMESLEAYVQ 178
            ..|:|..|...:.|.|..|..:      .:.|.||...:|::|...|....||            
  Rat    90 LRESGLQRPTAQNSENHVVVDT------PSPSDLSILPQRDSLAEMSLSENTA------------ 136

  Fly   179 FDLPVNSSLLNHW---PDYSLQLSDLWT-PALKSCPISSGVDVASSLGSDIIAIPTPQPLQTNEL 239
             |:..|||....|   .|:.|...:... |..||                  .:..|:.:.|:..
  Rat   137 -DVICNSSAYCSWGEKGDFFLATEEQEAHPQQKS------------------LLKNPKAVATSPF 182

  Fly   240 FSESI-SNSP--------------------FGRNSNFGVPELSQRENL-----DLLIQKFDEM-- 276
            ...|: |.||                    |.....|.:|...::||:     ||:|...:.:  
  Rat   183 SKASVHSESPHLTASTDDGDAQSSRSHSWNFFPLETFILPADMEKENVHFYAADLIISVIENLKC 247

  Fly   277 DVINEEQTGGDKAETNETAEQEAPSGSKTRSRKKSNRQMDSS----------------------S 319
            .:::::|.|   :...|.|.:...:|::......:.::.|.|                      |
  Rat   248 SLLSQQQPG---SSGTEEASRSCGTGAEVTFHTHAKQEPDPSASSHTGCEGCAALQVSPVAEALS 309

  Fly   320 FADLDLEAPSLLPQGSNSLSNLMQTSWSGDLEATPTSPTEELTGSRFFQRSVSVSSSVSLRSPTT 384
            :..:.:||.:|   ..|.|. :::...|.||       ||...||.....|.:..|::||.    
  Rat   310 YCPVAIEACTL---DLNKLV-ILELGKSNDL-------TEGCRGSYSSSESATCKSNLSLA---- 359

  Fly   385 DRCSYNALLRKHESNRESGAGWSEIW----EKFRASASNLNVAQPQRDTDPPISEDLSDLQSLDT 445
                  .||.     ||...|:.:.|    |..|....:|..|......:....|:|.  .|:||
  Rat   360 ------GLLA-----RELFRGFYKYWMLSEEVTRQPPGSLIPASSGVGEEEQAEEELD--SSVDT 411

  Fly   446 NSEFELLTSEFDMVELQQMVAQLCQL--------AREPGLDAQGFLCKSCQHPLGIGY-SNFQVC 501
            ..|. :|.|.....|  ..|...||:        .|:..:.||.|.|..|..|:...: ...:.|
  Rat   412 AREV-MLKSRVPGTE--DWVPPPCQIILTVHPPVKRDIAVVAQNFFCAGCGTPIQPKFVKRLRYC 473

  Fly   502 AFSGSYYCNSCMDVEMQLIPARIIYNWDFRKYSVSKRAATFLAEFRSHPFLDMQLLNPRIYFASD 566
            .:.|.|:|:.|.......|||||:..||||||.||..:...|......|..::...:..:|....
  Rat   474 EYLGKYFCDRCHSSAESCIPARILLMWDFRKYQVSDFSKWLLDSIWHQPIFNLLSGHHSLYAKVK 538

  Fly   567 AMAELQSLRIRLNFIRAYLYTC--APSSIELLQNQFAGREYLYEHIHLYSIADLALIQRGVLCQQ 629
            .:..::.::.:|..|:..|.||  |.|.::..:..   ..:|.:..|::|:.|....::|:|...
  Rat   539 ELDRVKDIQEQLFHIKKLLKTCRFADSVLKEFEQV---PSHLTDECHMFSMDDFLRTKKGLLAPL 600

  Fly   630 LQKAFKLGEAHVLKCRLCHLKGFICEICQSPRVLYPFHISTTFRCLACGAVFHAECLNEKQPCPK 694
            |:...:...|||..|.||..||||||.|||..|::||...|..||..|.|.||.:|....: ||:
  Rat   601 LKDILRASLAHVDSCELCQGKGFICEFCQSTTVIFPFQTMTCRRCAGCRACFHKQCFQSSR-CPR 664

  Fly   695 CERI--RKREDQGL 706
            |.||  |::..:.|
  Rat   665 CARIIARRQHSESL 678

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Plekhm1NP_611639.1 RUN 54..185 CDD:280855 23/130 (18%)
zf-RING_9 500..700 CDD:290612 66/203 (33%)
RubcnlXP_008769127.1 zf-RING_9 472..667 CDD:404739 64/198 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338511
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1829
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D177737at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.750

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