DRSC/TRiP Functional Genomics Resources

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Protein Alignment Plekhm1 and Rubcnl

DIOPT Version :9

Sequence 1:NP_611639.1 Gene:Plekhm1 / 37520 FlyBaseID:FBgn0034694 Length:720 Species:Drosophila melanogaster
Sequence 2:NP_941044.3 Gene:Rubcnl / 271221 MGIID:2685590 Length:675 Species:Mus musculus


Alignment Length:652 Identity:157/652 - (24%)
Similarity:250/652 - (38%) Gaps:138/652 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 SLEAYVQFDLP---VNSSLLNHWPDYSLQLSDLWTPALKSCPISSGVDVASSLGSDIIAIPTPQP 233
            |..|:...|.|   ::..||.|...:...|. :..|..:.||  ....|.||  .:.:.:.||.|
Mouse    46 SNRAFQDTDQPACQLDVRLLRHKASWINPLC-VQQPLQELCP--QRPTVQSS--ENHVVLDTPSP 105

  Fly   234 LQTNEL-FSESISNSPF-----------------GRNSNFGVPELSQRENL--DLLIQKFDEMDV 278
            |:.:.| :.:|::..|.                 |:..:|.:....|..:|  :.|::....:..
Mouse   106 LRLSILSYRDSLAEMPLSENTADVICSNSAHCSGGKEGDFFLATEEQEVHLQQESLLKNPKTVAT 170

  Fly   279 INEEQTGGDKAETNETAEQEAPSGSKTRSRKKSNRQMDSSSF---ADLDLE---------APSLL 331
            ....:.|..::|:...........:::.||..:.......:|   ||::.|         ..|::
Mouse   171 SPSPKEGSARSESPHLTASTDDGDARSSSRSHAWNFFPLETFMLPADVEKENLHFYAADIIISVI 235

  Fly   332 PQGSNSLSNLMQTSWSGDLEATPTSPTEELTGS----RFF----QRSVSVSSS-------VSLR- 380
            .....:|.|..|.      |...|.....|.|:    .|:    |...|.:||       .:|: 
Mouse   236 ENMKCNLPNQQQP------ERWDTEDASRLRGTGAEMTFYTHIKQEPGSSASSHTGCEGCAALQV 294

  Fly   381 SPTTD----------------------------------RCSYNALLRKH-ESN--------RES 402
            ||..:                                  |||||:..... |||        ||.
Mouse   295 SPVAETLSYCPVAGEACKHDLNKLVMLELGKYNDITKGCRCSYNSSKSATCESNLSPAGCLAREL 359

  Fly   403 GAGWSEIWEKFRASASNLNVAQPQRDT-------DPPISEDLSDLQSLDTNSEFELLTSEFDMVE 460
            ..|:.:.|     ..|.:|...|...|       |...:|:..| .|:|...|. :|.|.....|
Mouse   360 FRGFCKCW-----MLSEVNCQLPGSPTTASSGVGDEEYAEEDFD-SSVDAAREV-MLKSRVPGTE 417

  Fly   461 LQQMVAQLCQ--------LAREPGLDAQGFLCKSCQHPLGIGY-SNFQVCAFSGSYYCNSCMDVE 516
              ..|...||        :.|:..:.||.|.|..|..|:...: ...:.|.:.|.|:|.||....
Mouse   418 --DWVLPRCQIILTVHPPIKRDIAVVAQNFFCAGCGTPIQPKFVKRLRYCEYLGKYFCASCHSSA 480

  Fly   517 MQLIPARIIYNWDFRKYSVSKRAATFLAEFRSHPFLDMQLLNPRIYFASDAMAELQSLRIRLNFI 581
            ...|||||:..||||||.||..:...|......|...:...:..:|..:..:..::.|:.:|..|
Mouse   481 ESCIPARILTMWDFRKYQVSDFSKWLLDSVWHQPVFKLLGGHHSLYAKAKELDRVKDLQEQLFHI 545

  Fly   582 RAYLYTC--APSSIELLQNQFAGREYLYEHIHLYSIADLALIQRGVLCQQLQKAFKLGEAHVLKC 644
            :..|.||  |.|.::..:..   ..:|.:..|::|:.|....::|:|...|:...:...|||..|
Mouse   546 KKLLKTCRFADSVLKEFEQV---PSHLTDECHIFSMDDFLRTKKGLLAPLLKDILRASLAHVDSC 607

  Fly   645 RLCHLKGFICEICQSPRVLYPFHISTTFRCLACGAVFHAECLNEKQPCPKCERI--RKREDQGLQ 707
            .||..||||||.|||..|::||..:|..||.||.|.||.:|....: ||:|.||  |::..:.|.
Mouse   608 ELCQGKGFICEFCQSTTVIFPFQTTTCRRCAACRACFHKQCFQSSR-CPRCARIIARRQHLESLP 671

  Fly   708 EA 709
            .|
Mouse   672 TA 673

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Plekhm1NP_611639.1 RUN 54..185 CDD:280855 4/15 (27%)
zf-RING_9 500..700 CDD:290612 69/203 (34%)
RubcnlNP_941044.3 zf-RING_9 464..659 CDD:372797 67/198 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834926
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1829
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D177737at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.750

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