DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Plekhm1 and F20H11.1

DIOPT Version :9

Sequence 1:NP_611639.1 Gene:Plekhm1 / 37520 FlyBaseID:FBgn0034694 Length:720 Species:Drosophila melanogaster
Sequence 2:NP_498454.2 Gene:F20H11.1 / 175933 WormBaseID:WBGene00017646 Length:486 Species:Caenorhabditis elegans


Alignment Length:516 Identity:120/516 - (23%)
Similarity:189/516 - (36%) Gaps:122/516 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 LQTNELFSESISNSPFGRNSNFGVPELSQREN--------LDLLIQKFDEMDVINEEQTGGDKAE 290
            :..||:..|........|.||       :.||        |:....|..|: :|:||.|..|..|
 Worm    31 IDENEIDKEVQEMMDDWRRSN-------EAENHVECIKAALEYCRDKLKEL-LIDEEDTEMDGKE 87

  Fly   291 T-----NETAEQEAPSGSKT---------RSRKKSNRQMDSSSFADLDLEAPSLLPQGSNSLSNL 341
            |     |..:..|.|.....         |.:|.:.:||.......|.||..:|..:...|.|  
 Worm    88 TKTKPINIVSNTEFPEDRDVLGNLVNCLDRQQKAARQQMYFDKIVQLGLERQALQDEAVVSTS-- 150

  Fly   342 MQTSWSGDLEATPTSPTEE--LTGSRFFQRSVSVSSSVSLRSPTTDRCSYNALLRKHESNRESGA 404
                          ||.:|  ..|..|..:.|...     .:|..:.|.:..             
 Worm   151 --------------SPLDECRAEGHEFVMQPVRGG-----HNPCCEVCMHTI------------- 183

  Fly   405 GWSEI--WEKFRASASNLNVAQPQRDTDPPISEDLSDLQS--LDTNSEFELLTSEFDMVELQQMV 465
             |..:  |.:.|......:         ...:|::..:.:  |.|.::|||.|:           
 Worm   184 -WRLVQWWRRCRVCGMRAH---------DKCAEEVKRVCAGVLSTRAKFELNTN----------- 227

  Fly   466 AQLCQLAREPGLDAQGFLCKSCQHPL---GIGYSNFQVCAFSGSYYCNSCMDVEMQLIPARIIYN 527
              ||:   |..|..|.:.|..|..|:   |:.....::|.:||..:|.:|...::..|||||::|
 Worm   228 --LCE---ERSLAEQEYQCAECTAPICFDGVAEQEARLCDYSGELFCPNCHWNDVWSIPARIVHN 287

  Fly   528 WDFRKYSVSKRAATFLAEFRSHPFLDMQLLNPRIYFASDAMAELQSLRIRLNFIRAYLYTCAPS- 591
            .|.....|.:.....||.....|.:|:......:......:..:..||.....::.|..:|..: 
 Worm   288 LDSTPRPVCRAVKQLLAIIDHRPLIDINESTLSLIKFHKELRRVNELRRNFLLMKCYFVSCRTAR 352

  Fly   592 SIELLQNQFAGREYLYEHIH------LYSIADLALIQRGVLCQQLQKAFKLGEAHV-LKCRLCHL 649
            .:.:||       ||..|.|      :||..:|..:..|.|...|::...:...|: .:|..|..
 Worm   353 RLRILQ-------YLNAHSHFVDNSVMYSPKELRELCDGTLLPDLEQIHTVFRKHIEEECETCAG 410

  Fly   650 KGFICEIC------QSPRVLYPFHISTTFRCLACGAVFHAECLNEKQ-PCPKCERIRKRED 703
            .||.||:|      |..::|||| ...|..|..|.||:|.:|...|. .||:|||.|||.:
 Worm   411 NGFFCELCDDINVDQKNKILYPF-TENTRSCATCLAVYHKKCFERKSLNCPRCERRRKRTE 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Plekhm1NP_611639.1 RUN 54..185 CDD:280855
zf-RING_9 500..700 CDD:290612 59/214 (28%)
F20H11.1NP_498454.2 C1 161..212 CDD:237996 8/78 (10%)
zf-RING_9 259..467 CDD:290612 59/215 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1829
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4753
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D177737at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.770

Return to query results.
Submit another query.