DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13502 and Kdm6a

DIOPT Version :10

Sequence 1:NP_611637.1 Gene:CG13502 / 37518 FlyBaseID:FBgn0034692 Length:410 Species:Drosophila melanogaster
Sequence 2:XP_006527657.1 Gene:Kdm6a / 22289 MGIID:1095419 Length:1476 Species:Mus musculus


Alignment Length:230 Identity:51/230 - (22%)
Similarity:80/230 - (34%) Gaps:73/230 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 DAVPQIRNKKNEMIEYVFQTSF------GALKVRDLVGVRYGSRVQLTKGWAH----VLQPNPEL 83
            |::||:.:....:.|   :|.|      |.|..||.:........|.|:...|    :..|.|:.
Mouse   268 DSIPQLEDVSRFLKE---RTGFQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDC 329

  Fly    84 WTQTLPH------RTQILYTPDI---SMILYQLEVRPGSVV----IESGT----------GSGSL 125
            ..:.|.|      ||...::.||   |:.....|:...|.|    :|.|.          |:|.|
Mouse   330 CHELLGHVPMLADRTFAQFSQDIGLASLGASDEEIEKLSTVYWFTVEFGLCKQNGELKAYGAGLL 394

  Fly   126 SHY--FLRAIRPSGHLHTFDFHEERVAKAREE------FVAHGLGD------NVTVR-QR----- 170
            |.|  .|.::.....:..||.....|...:::      ||:....|      |...| ||     
Mouse   395 SSYGELLHSLSEEPEVRAFDPDTAAVQPYQDQTYQPVYFVSESFNDAKDKLRNYASRIQRPFSVK 459

  Fly   171 --------DVCE---------QGFGDELNGVADAV 188
                    ||.:         :|..|||:.:|.|:
Mouse   460 FDPYTLAIDVLDSPHTIQRSLEGVQDELHTLAHAL 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13502NP_611637.1 TPR 150..>277 CDD:440225 15/74 (20%)
TPR repeat 165..189 CDD:276809 11/47 (23%)
TPR repeat 194..224 CDD:276809
TPR repeat 229..257 CDD:276809
Kdm6aXP_006527657.1 TadD <77..163 CDD:444034
TPR repeat 95..123 CDD:276809
TPR repeat 131..161 CDD:276809
LapB 132..402 CDD:442196 32/136 (24%)
TPR repeat 166..196 CDD:276809
TPR repeat 207..235 CDD:276809
TPR repeat 287..314 CDD:276809 6/26 (23%)
TPR repeat 319..349 CDD:276809 6/29 (21%)
TPR repeat 354..380 CDD:276809 6/25 (24%)
JmjC 1151..1215 CDD:214721
JmjC 1185..1293 CDD:396791
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.