DRSC/TRiP Functional Genomics Resources

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Protein Alignment Synj and FRA3

DIOPT Version :10

Sequence 1:NP_569729.1 Gene:Synj / 37517 FlyBaseID:FBgn0034691 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_176736.2 Gene:FRA3 / 842869 AraportID:AT1G65580 Length:1101 Species:Arabidopsis thaliana


Alignment Length:685 Identity:171/685 - (24%)
Similarity:261/685 - (38%) Gaps:191/685 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   355 GNFSALAKLKERIVA-------CGANYGVFHA--SNGQVLREQFGVVRTNCLDCLDRTNCVQTYL 410
            |.|...::..|.||.       .|::.|:...  .||..|:| |....:..| |: .|.|.:.::
plant   399 GGFCDDSRKTEAIVISVDGMIWTGSSNGILMRWDGNGNCLQE-FAYESSGIL-CM-FTFCSRLWV 460

  Fly   411 GLDTLGIQ---LEALKMGGKQQNISRFEEIFRQMWINNGNEVSKIYAGT---------GAIQGGS 463
            |.....:|   ||...:||               |:.:...|.|:..|.         |.|:|.:
plant   461 GYSNGTVQVWDLEGKLLGG---------------WVAHSGPVIKMAIGAGYLFTLANHGGIRGWN 510

  Fly   464 KLMDGARSAARTIQNNLLDNSKQEAIDVLLVGSTLSSELADRARILLPSNMLHAPTTVLRELCKR 528
            ....|.           |||             .|.:|||.:..:                    
plant   511 VTSPGP-----------LDN-------------VLRAELAGKEFL-------------------- 531

  Fly   529 YTEYVRPRMARVAVGTYNVNGGKHFRSIVFKDSLADWLLDCHALARSKALVDVNNPSENVDHPVD 593
               |.|....::..||:||..|:     ...|||..| |.|.|..                  |:
plant   532 ---YSRIENLKILAGTWNVGEGR-----ASTDSLVSW-LGCAATG------------------VE 569

  Fly   594 IYAIGFEEIVDLNASNI-MAASTDNAKL--------WAEELQKTISRDNDYVLLTYQQLVGVCLY 649
            |..:|.:| |::.|..: |:|:.:...|        |.:.:.||:...:.:|.:..:||.|:.:.
plant   570 IVVVGLQE-VEMGAGVLAMSAAKETVGLEGSPLGQWWLDMIGKTLDEGSSFVRVGSRQLAGLLIC 633

  Fly   650 IYIRPEHAPHIRDVAIDCVKTGLGGATGNKGACAIRFVLHGTSMCFVCAHFAAGQSQVAERNADY 714
            :::|.:..||:.||....|..|.|.|.|||||..:|..::...:|||..||||....|..||||:
plant   634 VWVRHDLKPHVGDVDAAAVPCGFGRAIGNKGAVGVRLRMYDRVLCFVNCHFAAHLEAVNRRNADF 698

  Fly   715 AEITRKLAF--------------------PMGRT------------LKSHDWVFWCGDFNYRI-D 746
            ..:.|.:.|                    |.|..            |...|.|.:.||||||: |
plant   699 DHVYRTMTFSRQSSSLNAGVAGASFGVTMPRGGNALGVNTIEARPELSEADMVIFLGDFNYRLDD 763

  Fly   747 MEKDELKECVRNGDLSTVLEFDQLRKEQEAGNVFGEFLEGEITFDPTYKYDLFS---DDYDTSEK 808
            :..||.::.:.......:.|.|||..|.||||||....|..|.|.||||::...   ..||:.||
plant   764 ITYDETRDFISQRCFDWLREKDQLHTEMEAGNVFQGMREAIIRFPPTYKFERHQAGLAGYDSGEK 828

  Fly   809 QRAPAWTDRVLWRRRKALAEGDFAASAWNPGKLIHYGR-SELKQSDHRPVIAIIDAEIMEIDQQR 872
            :|.|||.||:|:|..|.....:.:........:..|.. .|:..|||:||..:...:|..:|:..
plant   829 KRIPAWCDRILYRDNKKHLGAECSLDCPVVSSISQYDACMEVTDSDHKPVRCVFSVKIARVDESV 893

  Fly   873 RRAVFEQVIRDLGPPDSTIVVHVLESSATGDEDGPTIYDENVMSALITELSKMGEVTLVRYVEDT 937
            ||                            .|.|..|.....:..|:.||||:.| |:|    .|
plant   894 RR----------------------------QEYGNIINSNKKIKVLLGELSKVPE-TIV----ST 925

  Fly   938 MWVTFRDGESA-LNASSKKSIQVCGLDLILELKSK 971
            ..:..::.:|. |..::|....:....:|.|.:||
plant   926 NNIILQNQDSTILRITNKSEKNIAFFKIICEGQSK 960

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynjNP_569729.1 COG5329 61..493 CDD:227637 33/158 (21%)
INPP5c_Synj 538..863 CDD:197323 109/370 (29%)
DUF1866 862..1008 CDD:286093 23/111 (21%)
FRA3NP_176736.2 WD40 117..513 CDD:441893 29/131 (22%)
WD40 repeat 186..221 CDD:293791
WD40 repeat 230..264 CDD:293791
WD40 repeat 413..442 CDD:293791 6/29 (21%)
WD40 repeat 449..481 CDD:293791 10/48 (21%)
INPP5c 538..884 CDD:197308 109/370 (29%)
Motile_Sperm 919..1043 CDD:459882 11/47 (23%)
Blue background indicates that the domain is not in the aligned region.

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