DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Synj and ATSAC1B

DIOPT Version :9

Sequence 1:NP_001246454.1 Gene:Synj / 37517 FlyBaseID:FBgn0034691 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_201403.2 Gene:ATSAC1B / 836732 AraportID:AT5G66020 Length:593 Species:Arabidopsis thaliana


Alignment Length:578 Identity:176/578 - (30%)
Similarity:275/578 - (47%) Gaps:96/578 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 KVCDAYGCLGALQLNAGESTVLFLVLVTGCVSMGKIGDIEIFRITQTTFV----SLQNAAPNED- 115
            |:...:|.:|.|:|.||.    :||:||...|:|......|::|....|:    ||:|  |:|: 
plant    58 KIRSIFGVVGMLKLLAGS----YLVVVTESESVGSFLGHPIYKINSLKFLPCDHSLEN--PHEEQ 116

  Fly   116 ---KISEVRKLLN-----SGTFYFAHTNASASASGASSYRFDITLCAQRRQQT----------QE 162
               :..:..:||:     :|.::              ||..::||.|||....          ::
plant   117 KKMETDDYSRLLSVAERTTGLYF--------------SYEINLTLTAQRLHDLGDESKLLPLWRQ 167

  Fly   163 TDNRFFWNRMMHIHLMRFGIDCQSWLLQAMCGSVEVRTVYIGAKQARAAIISRLSCERAGTRFNV 227
            .:.||.||..|...|:...:|  .:||..:.||.......||.......:|:|....|.|||...
plant   168 AEPRFLWNNYMLEVLIDNKLD--QFLLPVIQGSFHSFQTAIGRDIVDITLIARRCSRRNGTRMWR 230

  Fly   228 RGTNDEGYVANFVETEQVIYVDGDVTSYVQTRGSVPLFWEQPGVQVGSHKVKLSRGFETSAAAFD 292
            ||.:.:|||||||||||::.::|..:|:||.|||:|..|||........|.::.:. |.:|...:
plant   231 RGADPDGYVANFVETEQIVRMNGYTSSFVQIRGSMPFMWEQIVDLTYKPKFEIVQP-EEAARIAE 294

  Fly   293 RHMSMMRQRYGYQTVVNLLGSSLVGSKEGEAMLSNEFQRHHGMSAH---KDVPHVVFDYHQECRG 354
            ||...:|::||     ::|...||....||..||..|.   |...|   .||.::.||:|..|..
plant   295 RHFLDLRKKYG-----SVLAVDLVNKHGGEGRLSERFA---GAMQHITGDDVRYLHFDFHHICGH 351

  Fly   355 GNFSALAKLKERIVACGANYGVFHAS-NGQVLREQFGVVRTNCLDCLDRTNCVQTYLGLDTLGIQ 418
            .:|..||.|.|::.......|.|..: .|:.::||.|:|||||:|||||||..|:.:|...|.:|
plant   352 IHFERLAILYEQMEDFLEKNGYFLLNEKGEKMKEQLGIVRTNCIDCLDRTNVTQSMIGRKLLELQ 416

  Fly   419 LEALKMGGKQQNI---SRFEEIFRQMWINNGNEVSKIYAGTGAIQG-----GSK-----LMDGAR 470
            |:.:.:.|.::.|   ..|:|.::.:|.|:|:::|..|:||.|::|     |.:     |.||..
plant   417 LKRIGVFGAEETIRSHQNFDECYKILWANHGDDISIQYSGTPALKGDFVRYGQRTIQGVLQDGWN 481

  Fly   471 SAARTIQNNLLDNSKQEAIDVLLVGSTLSSELADRARILLP--------SNMLHAPTTVLRELCK 527
            :.||...||..|.:||:||| |:.|..:.:...|.|.:  |        :|...|.|.:|     
plant   482 ALARYYLNNFADGTKQDAID-LVQGHYIVAVSRDMAPV--PRKRGLEAVANFPVALTVIL----- 538

  Fly   528 RYTEYVRPRMARVAVGTYNVNGGKHFRSIVFKDSLADWLLDCHALARSKALVDVNNPS 585
              ..:....|:...||    :|.||   ::|....|...:...||.|:...:..|.||
plant   539 --ISFWFATMSVKQVG----SGYKH---LLFSLVWAGISVAVAALVRANGRIFCNRPS 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynjNP_001246454.1 Syja_N 61..353 CDD:280532 96/317 (30%)
INPP5c_Synj 538..863 CDD:197323 13/48 (27%)
DUF1866 862..1008 CDD:286093
ATSAC1BNP_201403.2 COG5329 62..545 CDD:227637 161/523 (31%)
Syja_N 63..349 CDD:280532 96/316 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D359616at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.