DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Synj and AT5G04980

DIOPT Version :9

Sequence 1:NP_001246454.1 Gene:Synj / 37517 FlyBaseID:FBgn0034691 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_001078529.1 Gene:AT5G04980 / 830380 AraportID:AT5G04980 Length:466 Species:Arabidopsis thaliana


Alignment Length:525 Identity:138/525 - (26%)
Similarity:201/525 - (38%) Gaps:196/525 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   480 LLDNSKQE-AIDVLLVGSTLSSELADRARILLPSNMLHAPTTVLRELCKRYTEYVRPRMARVAVG 543
            :.:.|:.| .::.||..|.|.|.:               ||..::.|             ||.|.
plant     7 IFNRSQSEIVVESLLASSNLRSSM---------------PTQQIQSL-------------RVFVA 43

  Fly   544 TYNVNGGKHFRSIVFKDSLADWLLDCHALARSKALVDVNNPSENVDHPVDIYAIGFEEIVDLNAS 608
            |:|| |||...|.:..|:|.                       :|....|:|.:||:|||.|||.
plant    44 TWNV-GGKSPHSGLNLDALL-----------------------HVHSEFDVYVLGFQEIVPLNAG 84

  Fly   609 NIMAASTD--------------------------------------------------------- 616
            |::....:                                                         
plant    85 NVLVLGDNEPAAKWLAMINQSLNKSSSSSGGRLSPKTPSFGAGSMFFAKPSLKKISESFRTECRR 149

  Fly   617 -----NAKLWAEELQKTISR---------------------------DND--------------- 634
                 |...::|::.:...|                           |:|               
plant   150 KLKICNCSTFSEDIVRKYGRESCFRCPEGLVNQSGVLSDDEEDEDDDDDDEDEDEGGGKVASLVS 214

  Fly   635 ------YVLLTYQQLVGVCLYIYIRPEHAPHIRDVAIDCVKTGLGGATGNKGACAIRFVLHGTSM 693
                  |.|:..:|:||:.|.:::|.|...|:..:.|..|..|:.|..||||..|:...|:.||.
plant   215 NQMTMKYGLVASKQMVGIFLTVWMRKELIQHVSHLRISSVTRGIMGCLGNKGCIAVSLQLYKTSF 279

  Fly   694 CFVCAHFAAGQSQVAE--RNADYAEITRKLAFP-MGRT--------LKSHDWVFWCGDFNYRIDM 747
            ||:|:|.|:|:.:..|  ||.|..||.:..:|| :.||        :..||.|.|.||.||||.:
plant   280 CFICSHLASGEREGDERRRNLDVIEILKNTSFPRICRTSFTRVPDRITKHDRVIWLGDLNYRIAL 344

  Fly   748 EKDELKECVRNGDLSTVLEFDQLRKEQEAGNVFGEFLEGEITFDPTYKYDLFSDDY--DTSE--- 807
            ...|.|..:......|:|..|||:.|::||.||..:.||:|.|.|||||...||.|  |||:   
plant   345 SYSETKTLLDKNAWDTLLNKDQLKIERDAGRVFKGWHEGKIFFAPTYKYSYNSDAYAGDTSKEKK 409

  Fly   808 -KQRAPAWTDRVLWRRRKALAEGDFAASAWNPGKLIHYGRSELKQSDHRPV--IAIIDAEIMEID 869
             |:|.|||.||:||       .||..       :.:.|.|.|.:.||||||  :.::|.|:.|..
plant   410 NKRRTPAWCDRILW-------HGDGI-------RQLSYVRGESRFSDHRPVCSVFVVDVEVCEGK 460

  Fly   870 QQRRR 874
            ...||
plant   461 TGTRR 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynjNP_001246454.1 Syja_N 61..353 CDD:280532
INPP5c_Synj 538..863 CDD:197323 123/453 (27%)
DUF1866 862..1008 CDD:286093 5/13 (38%)
AT5G04980NP_001078529.1 EEP 36..456 CDD:294334 125/470 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5411
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.770

Return to query results.
Submit another query.