Protein Alignment Synj and RHD4

DIOPT Version :10

• Sequence 1: NP_569729.1
• Gene: Synj / 37517
• FlyBaseID: FBgn0034691
• Length: 1218
• Species: Drosophila melanogaster
• Sequence 2: NP_190714.2
• Gene: RHD4 / 824309
• AraportID: AT3G51460
• Length: 597
• Species: Arabidopsis thaliana
• Alignment Length: 514
• Identity: 159/514 - (30%)
• Similarity: 257/514 - (50%)
• Gaps: 67/514 - (13%)

  Fly    18 PHSVLLEHRNKSDSILFE----SHAVALLTQ-QETDVIRKQYTKVCDAYGCLGALQLNAGESTVL 77
            |...::|..:.|.|...:    ..::.|:.| .|::.:|  ..|:...:|.:|.|:|.||.
plant    20 PDQYIIEPADGSGSSCLDISRVDASMKLIDQVPESNSVR--VPKIRSIFGVVGMLKLLAGS---- 78

  Fly    78 FLVLVTGCVSMGKIGDIEIFRITQTTFV----SLQNAAPNEDKI-SEVRKLLN-----SGTFYFA 132
            :||:||....:|......||::|....:    ||:|:...:.|: :|..|||:     :|.::
plant    79 YLVVVTESERVGSFLGHPIFKVTTLKVLPCDHSLKNSPEEQKKMETEFSKLLSVAEKTTGLYF-- 141

  Fly   133 HTNASASASGASSYRFDITLCAQRRQQT----------QETDNRFFWNRMMHIHLMRFGIDCQSW 187
                        ||..::||.:||..:.          ::.:.||.||..|...|:...:|  .:
plant   142 ------------SYEVNLTLSSQRLHEMGDESKSLPLWRQAEPRFLWNNYMLEVLIDNKLD--QF 192

  Fly   188 LLQAMCGSVEVRTVYIGAKQARAAIISRLSCERAGTRFNVRGTNDEGYVANFVETEQVIYVDGDV 252
            ||..:.||.......||.......:|:|....|.|||...||.:.:|||||||||||::.::|..
plant   193 LLPVIQGSFNSFETAIGRDIVDITLIARRCTRRNGTRMWRRGADLDGYVANFVETEQIVQMNGYT 257

  Fly   253 TSYVQTRGSVPLFWEQPGVQVGSHKVKLSRGFETSAAAFDRHMSMMRQRYGYQTVVNLLGSSLVG 317
            :|:||.|||:|..|||........|.::.:..|....| :||...:|::||     ::|...||.
plant   258 SSFVQVRGSMPFMWEQVVDLTYKPKFEIVQPEEAKRIA-ERHFLDLRKKYG-----SVLAVDLVN 316

  Fly   318 SKEGEAMLSNEFQRHHGMSAHKDVPHVVFDYHQECRGGNFSALAKLKERIVACGANYGVFHAS-N 381
            .:.||..|..::..........|:.::.||:||.|...:|..|:.|.|:|.......|.|..: .
plant   317 KQGGEGRLCEKYATVMQHITGDDIRYLHFDFHQICGHIHFERLSILYEQIEGFLEKNGYFLLNEK 381

  Fly   382 GQVLREQFGVVRTNCLDCLDRTNCVQTYLGLDTLGIQLEALKMGGKQQNIS---RFEEIFRQMWI 443
            |:.::||.||||:||:|||||||..|:.:|...|.:||:.:.:.|.::.||   .|:|.::.:|.
plant   382 GEKMKEQLGVVRSNCIDCLDRTNVTQSMIGRKMLEVQLKRIGVFGAEETISSHLNFDEHYKILWA 446

  Fly   444 NNGNEVSKIYAGTGAIQG-----GSK-----LMDGARSAARTIQNNLLDNSKQEAIDVL 492
            |:|:|:|..|:||.|::|     |.:     |.||..|..|...||..|.:||:|||:|
plant   447 NHGDEISIQYSGTPALKGDFVRYGHRTAHGVLKDGWSSLRRYYLNNFADGTKQDAIDLL 505

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Synj	NP_569729.1	COG5329	61..493	CDD:227637	150/466 (32%)
		INPP5c_Synj	538..863	CDD:197323
		DUF1866	862..1008	CDD:286093
RHD4	NP_190714.2	COG5329	65..551	CDD:227637	150/467 (32%)