DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Synj and AT3G14205

DIOPT Version :9

Sequence 1:NP_001246454.1 Gene:Synj / 37517 FlyBaseID:FBgn0034691 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_566481.1 Gene:AT3G14205 / 820638 AraportID:AT3G14205 Length:808 Species:Arabidopsis thaliana


Alignment Length:696 Identity:147/696 - (21%)
Similarity:265/696 - (38%) Gaps:190/696 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 VCDAYGCLGALQLNAGESTVLFLVLVTGCVSMGKIGDIEIFRITQTTFVS------LQNAAPNED 115
            |...||.:|.::...    ..:::::|....:|:|....::.:.::..::      |.|.|.::|
plant    90 VTTCYGIIGFIRFLG----PYYMLIITKRKKLGEICGHTVYGVAKSKIITIPHASVLSNVAYSKD 150

  Fly   116 K---------ISEVRKLLNSGTFYFAHT---NASASASGASSYRFDITLCAQRRQQTQETDNRFF 168
            :         :...:....|.:::..||   |.|.:..|.:.|                 ::.|.
plant   151 EKRYKRLLCTVDLTKDFFFSYSYHIMHTLQRNLSNNVEGHTYY-----------------ESMFV 198

  Fly   169 WNRMMHIHLMRFGIDCQSWLLQAMCGSVEVRTVYIGAKQARAAIISRLSCERAGTRFNVRGTNDE 233
            ||..:...:.....||. |.:..:.|..:...:.:..|..|..:|||.|...||||:..||.|::
plant   199 WNEYLTRRIRNNVKDCM-WTVALVYGFFKQVKLSVSEKNFRLTLISRRSRHYAGTRYLKRGVNEK 262

  Fly   234 GYVANFVETEQVIYVD------GDVTSYVQTRGSVPLFWEQPGVQVGSHKVKLSRGFETSAAAFD 292
            |.|||.|||||:::.:      |.::|.||.|||:||||.|...::......:....:.:..|..
plant   263 GRVANDVETEQIVFEEAQDGNPGRISSVVQNRGSIPLFWSQETSRLNIKPDIILSPKDPNFEATR 327

  Fly   293 RHMSMMRQRYGYQTVVNLLGSSLVGSKE---GEAMLSNEFQR-----HHGMSAHKDVPHVVFDYH 349
            .|...:.:|||...::    .:|:.::|   .|.:|..||..     :.|:|....:..:.:|.|
plant   328 LHFENLGRRYGNPIII----LNLIKTREKRPRETILRAEFANAIRFINKGLSKEDRLRPLHWDLH 388

  Fly   350 QECRGGNFSALAKLKERIVACGANY-GVFH----------------------------------- 378
            :..|....:.||.| .|:.....|. .:|:                                   
plant   389 KHSRKKGTNVLAIL-GRLATYALNLTSIFYCQLTPDLRGEGFQNQNPSTLENDDGECSTYDPPSK 452

  Fly   379 --------ASNG------------QVLREQFGVVRTNCLDCLDRTNCVQTYLGLDTLGIQLEALK 423
                    ..||            :|...|.||:||||:|||||||..|...||...|.||.||.
plant   453 DETAPNLVVENGNDSKDAKEDQQKEVTMLQKGVLRTNCIDCLDRTNVAQYAYGLVAFGRQLHALG 517

  Fly   424 MGGKQQNI---SRFEEIFRQMWINNGNEVSKIYAGT-----------GAIQGGSKLMDGARSAAR 474
            : .:..||   :...|....::...|:.::..|.|:           |..:..::..:..|:..|
plant   518 L-TESTNIDLDNPLAEDLMGIYETMGDTLALQYGGSAAHNKIFCERRGQWRAATQSQEFFRTLQR 581

  Fly   475 TIQNNLLDNSKQEAIDVLLVGSTLSSELADRARILLPSNMLHAPTTVLRELCKRYTEYVRPRMAR 539
            ...|..:|..||:||:|.|                                     .|.:|:..:
plant   582 YYSNAYMDAEKQDAINVFL-------------------------------------GYFQPQSDK 609

  Fly   540 VAVGTYNVNGGKHFRSIVFKDSLADWLLDCHALARSKALVDVNNPSENVDHPVDIYAIG------ 598
            .|:  :.:...:|:.:..|   ||:.:.:.......::|.:.:..||:  .|..:..:|      
plant   610 PAL--WELGSDQHYNAARF---LANSVPETSRSTMKRSLSESSIISES--SPAALGPVGRHGLAE 667

  Fly   599 -FEEIVDLNASNIMAASTDNAKLWA---------EELQKTISRDND 634
             .||:..|:.|....::::.||:.|         |||......:||
plant   668 KDEEVKGLSDSAPEISTSETAKIAASLSAPPPILEELGLDDILEND 713

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynjNP_001246454.1 Syja_N 61..353 CDD:280532 73/323 (23%)
INPP5c_Synj 538..863 CDD:197323 22/113 (19%)
DUF1866 862..1008 CDD:286093
AT3G14205NP_566481.1 Syja_N 94..392 CDD:396798 73/323 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D359616at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.