DRSC/TRiP Functional Genomics Resources

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Protein Alignment Synj and Inppl1

DIOPT Version :9

Sequence 1:NP_001246454.1 Gene:Synj / 37517 FlyBaseID:FBgn0034691 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_075233.1 Gene:Inppl1 / 65038 RGDID:68396 Length:1257 Species:Rattus norvegicus


Alignment Length:864 Identity:204/864 - (23%)
Similarity:315/864 - (36%) Gaps:255/864 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   473 ARTIQNNLLDNSKQEAIDVLLVGSTLSSELADRAR----ILLPSNMLHAPTTVLRELCKRYTEYV 533
            ::.:||.|              |.....| .||.:    |.:.:....|...:|:.:..::::..
  Rat   371 SQRVQNKL--------------GVVFEKE-KDRTQRKDFIFVSARKREAFCQLLQLMKNKHSKQD 420

  Fly   534 RPRMARVAVGTYNVNGGKHFRSIVFKDSLADWLLDCHALARSKALVDVNNPSENVDHPVDIYAIG 598
            .|.|..|.:||:|:.      |:....::..|..   :....|||.:|     .|..|.|||..|
  Rat   421 EPDMISVFIGTWNMG------SVPPPKNVTSWFT---SKGLGKALDEV-----TVTIPHDIYVFG 471

  Fly   599 FEEIVDLNASNIMAASTDNAKLWAEELQKTISR--DNDYVLLTYQQLVGVCLYIYIRPEHAPHIR 661
            .:|            ::...:.|.:.|:..:..  |.||..:..|.|..:.:.:.::|||...|.
  Rat   472 TQE------------NSVGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRIS 524

  Fly   662 DVAIDCVKTGLGGATGNKGACAIRFVLHGTSMCFVCAHFAAGQSQVAERNADYAEITRKLAFPMG 726
            .|:...||||:....|||||..:.|:.:|||..||..|..:|..:...||.:|.:|.|.|:  :|
  Rat   525 HVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTTRRNQNYLDILRLLS--LG 587

  Fly   727 -RTLKSHD------WVFWCGDFNYRIDMEKDELKECVRNGDLSTVLEFDQLRKEQEAGNVFGEFL 784
             |.|.:.|      .:||.||.|||:||:..|:...:...:...:|..|||..|:|...||..|.
  Rat   588 DRQLSAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRREFEPLLRVDQLNLEREKHKVFLRFS 652

  Fly   785 EGEITFDPTYKYDLFSDDYDTSEKQR-------APAWTDRVLWRRRKALAEGDFAASAWNPGKLI 842
            |.||:|.|||:|:..|.|.....||:       .|:|.||:||   |:..|.....::       
  Rat   653 EEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILW---KSYPETHIICNS------- 707

  Fly   843 HYG-RSELKQSDHRPVI-----------------------AIIDAEIME-IDQQRRRAVF----- 877
             || ..::..|||.||.                       |.|:.|.:| |.:...|..|     
  Rat   708 -YGCTDDIVTSDHSPVFGTFEVGVTSQFISKKGLSKTSDQAYIEFESIEAIVKTASRTKFFIEFY 771

  Fly   878 --------EQVIRDLGPPDSTIVVHVLESS-----------------------ATGDEDGPTIYD 911
                    :....|....|:...:.|..||                       .....||...|.
  Rat   772 STCLEEYKKSFENDAQSSDNINFLKVQWSSRQLPTLKPILADIEYLQDQHLLLTVKSMDGYESYG 836

  Fly   912 ENVMS----------ALITELSKMGEVT-------LVRYVEDTM--------WVTFRDGESALNA 951
            |.|::          ..:|.||..||.|       .||...:.:        |::....::  .|
  Rat   837 ECVVALKSMIGSTAQQFLTFLSHRGEETGNIRGSMKVRVPTERLGTRERLYEWISIDKDDT--GA 899

  Fly   952 SSKKSIQVCGLDLILELKSKDWQHLVDSEIELCTTNTIPLCANPVEHAQLLQAITPELPQRPKQP 1016
            .||....:.|          ..:|...|.....|..:.||               .:|.:.|::|
  Rat   900 KSKAPSVLRG----------SQEHRSGSRKPTSTEASCPL---------------SKLFEEPEKP 939

  Fly  1017 PTRPPARPPMPMSPKNSPRHLPHVGVISIVPKPAKPPMPPQPQSQPLIPSPLQPQVAPPRPPAMD 1081
            |  |..|||.|      ||.:|.           :..:.|:.:|:   .:|.|..||.|.|....
  Rat   940 P--PTGRPPAP------PRAVPR-----------EESLNPRLKSE---GTPEQEGVAAPPPKNSF 982

  Fly  1082 TTPS--SKSQSPTELVSASSSTSSSGKTSPTAPAVLSGPPTPPRQMQSKQATPVSTPTRQVGSPK 1144
            ..|:  .....|.:|:             |..|...:..|.||   .:|....::.|..|:|..:
  Rat   983 NNPAYYVLEGVPHQLL-------------PLEPTSFARAPIPP---TTKNKVAITVPAPQLGRHR 1031

  Fly  1145 DPIPSDTAYETASNIYEEIQEDVPAPRHPPPAGP------PP-------------VIGAPMGPPP 1190
            .|...:     .|:..|:....:|.|..|||..|      ||             .:|...||||
  Rat  1032 TPRVGE-----GSSSDEDSGGTLPPPDFPPPPLPDSAIFLPPNLDPLSMPVVRGRSVGEARGPPP 1091

  Fly  1191 PLPNRRGPPPIPNRSGNAP 1209
            |..:.|  ||:|  .|.:|
  Rat  1092 PKAHPR--PPLP--PGTSP 1106

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynjNP_001246454.1 Syja_N 61..353 CDD:280532
INPP5c_Synj 538..863 CDD:197323 104/364 (29%)
DUF1866 862..1008 CDD:286093 33/207 (16%)
Inppl1NP_075233.1 SH2_SHIP 17..119 CDD:198206
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 119..181
INPP5c_SHIP2-INPPL1 425..728 CDD:197335 102/341 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 897..986 29/137 (21%)
SH3-binding 945..950 3/10 (30%)
NPXY motif 984..987 1/2 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1004..1115 30/115 (26%)
SAM_Ship2 1193..1255 CDD:188890
SAM 1201..1257 CDD:197735
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339891
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5411
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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