DRSC/TRiP Functional Genomics Resources

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Protein Alignment Synj and LOC569568

DIOPT Version :9

Sequence 1:NP_001246454.1 Gene:Synj / 37517 FlyBaseID:FBgn0034691 Length:1218 Species:Drosophila melanogaster
Sequence 2:XP_009303404.2 Gene:LOC569568 / 569568 -ID:- Length:790 Species:Danio rerio


Alignment Length:620 Identity:159/620 - (25%)
Similarity:255/620 - (41%) Gaps:141/620 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   593 DIYAIGFEEIVDLNASNIM-AASTDNAKLWAEELQKTISRDNDYVLLTYQQLVGVCLYIYIRPEH 656
            |::.:|.:|:..:....:. |..||.   |:|....|:||.. |||:..|::.||.|.::.:..|
Zfish   246 DMFVVGLQEVNSMINKRLKDALFTDQ---WSELCMDTLSRFG-YVLVASQRMQGVFLLVFSKFCH 306

  Fly   657 APHIRDVAIDCVKTGLGGATGNKGACAIRFVLHGTSMCFVCAHFAAGQSQVAERNADYAEITRKL 721
            .|.:|.|.....:|||||..||||..:.|.::.|..:||:..|..|....:.:|..|:..|.::.
Zfish   307 LPFLRGVQTQSTRTGLGGYWGNKGGVSARMMVFGHPVCFLNCHLPAHMRNLEQRMEDFESILQQQ 371

  Fly   722 AFPMGRT--LKSHDWVFWCGDFNYRID-MEKDELKECVRNGDLSTVLEFDQLRKEQEAGNVFGEF 783
            .|.....  :..||.|||.||.|:||: .:...:|..:.|..|..:.|.|||...:::.:|...|
Zfish   372 QFEGSNAVGVLDHDVVFWFGDLNFRIEGYDIHVVKSAIENDKLPLLWEKDQLNMAKKSESVLEGF 436

  Fly   784 LEGEITFDPTYKYDLFSDDYDTSEKQRAPAWTDRVLWRRRK----------ALAEGDFAASAWNP 838
            :||.:.|.||||:|:.:..||||.|:|.||||||:|||.|:          ||..|   .::|..
Zfish   437 IEGPLKFPPTYKFDVGTHTYDTSAKKRKPAWTDRILWRLRRTGSPVPSHNSALQRG---LTSWLG 498

  Fly   839 GK--------LIHYGRSELKQSDHRPVIAI--------IDAEIMEIDQQRRRAVFEQVIRDLGPP 887
            |.        ..|.|   ...|||:||.|:        :...::.::.::....|.         
Zfish   499 GATRVSQHFYCSHMG---FTISDHKPVSALFSLHFPFKVTLPLVTLEVEKEWTKFS--------- 551

  Fly   888 DSTIVVHVLESSATGDEDGPTIY-----DENVMSALITELSKMGEVTLVRYVEDTMWVTFRD-GE 946
            |:|:.:.:.........|...:|     .....:|.:...|:.....:|...||..    || ||
Zfish   552 DATVKLTMAHGFQRSSWDWVGLYKVGFKHHKDYAAYVWAKSEHSTQVVVFSEEDLP----RDPGE 612

  Fly   947 SALNASSKKSIQVCGLDLILEL------------KSKDWQHLVDSEIELCTTNTIPLCA------ 993
            ..|...|.....:.|:....::            :|:.....|.||.:    :|:.|.|      
Zfish   613 YILGYYSNNMNSIAGVTEPFQVQLPMSTPPAPACRSRSDSSDVSSEDD----STLVLLAPSSRSP 673

  Fly   994 NPVEHAQLLQAITPELPQRPKQPPTRPPARPPMPMSPKNSPRHLPHVGVISIVPKPAKPPMPPQP 1058
            :|..|       :.:.....|:..:|.||.|.:..:|      ||.:..:|:.|:|...|.    
Zfish   674 SPGNH-------SGKRHHHQKRQRSRSPAVPALSGTP------LPSLQSLSLCPRPRDGPQ---- 721

  Fly  1059 QSQPLIPSPLQPQVAPPRPPAMDTTPSSKSQ--SPTELVSASSSTSS--------SGKTSPTA-P 1112
                        :.:.|||    :|.:.|.:  ||..|.|.|.|..|        :|.::|.| .
Zfish   722 ------------KTSSPRP----STNAKKERLVSPDSLTSPSLSPLSPRSPGSPGNGISAPEALV 770

  Fly  1113 AVLSGPPTPPRQMQSKQATPVSTPTRQVGSPKDPI 1147
            |.:.|.|.|                .|:|.|.|.|
Zfish   771 AAILGEPRP----------------AQIGKPGDVI 789

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynjNP_001246454.1 Syja_N 61..353 CDD:280532
INPP5c_Synj 538..863 CDD:197323 97/299 (32%)
DUF1866 862..1008 CDD:286093 26/169 (15%)
LOC569568XP_009303404.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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