DRSC/TRiP Functional Genomics Resources

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Protein Alignment Synj and Sh2d1a

DIOPT Version :10

Sequence 1:NP_569729.1 Gene:Synj / 37517 FlyBaseID:FBgn0034691 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_001102783.2 Gene:Sh2d1a / 501502 RGDID:1562408 Length:126 Species:Rattus norvegicus


Alignment Length:119 Identity:28/119 - (23%)
Similarity:47/119 - (39%) Gaps:21/119 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 VIRKQYTKVCDAYGCLGALQLNAGESTVLFLVLVTG--CVSMGKIGDIEIFRITQTTFVSLQ-NA 110
            :.|:...|:..|.|..|:..|...||       |.|  |:.:...|.|..:|::||...|.. ..
  Rat    11 ISREMGEKLLLATGLDGSYLLRDSES-------VPGVYCLCVLYQGYIYTYRVSQTETGSWSAET 68

  Fly   111 APNEDK--ISEVRKLLNS---------GTFYFAHTNASASASGASSYRFDITLC 153
            ||...|  ..:|:.|:::         ....:....:||.:..|.:.|.|..:|
  Rat    69 APGVHKRFFRKVKNLISAFQKPDQGIVTPLQYPVEKSSARSPQAPTGRRDSDIC 122

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynjNP_569729.1 COG5329 61..493 CDD:227637 25/107 (23%)
INPP5c_Synj 538..863 CDD:197323
DUF1866 862..1008 CDD:286093
Sh2d1aNP_001102783.2 SH2_SAP1a 2..104 CDD:198263 22/99 (22%)
Interaction with FYN SH3 domain. /evidence=ECO:0000250|UniProtKB:O88890 67..92 5/24 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..126 6/23 (26%)
Blue background indicates that the domain is not in the aligned region.

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