DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Synj and Ocrl

DIOPT Version :9

Sequence 1:NP_001246454.1 Gene:Synj / 37517 FlyBaseID:FBgn0034691 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_001259153.1 Gene:Ocrl / 31157 FlyBaseID:FBgn0023508 Length:850 Species:Drosophila melanogaster


Alignment Length:632 Identity:171/632 - (27%)
Similarity:261/632 - (41%) Gaps:182/632 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   443 INNGNE--VSKIYAGTGAIQGGSKLMDGARSAARTIQNNL----------------LDNSKQEAI 489
            :::.||  ::|::    ||....:|...::|:..|.|.:|                ..:.::...
  Fly    76 LSSANELIINKVF----AIDHNFQLRQDSKSSITTQQFDLSTAEDGPIKYYYYATESHHYEEFVA 136

  Fly   490 DVLLVGSTLSSELADRARILLPSNMLHAPTTVL---------------RELCKRYTEYVRPRMAR 539
            .|:...||::.               |.|.|||               :||.||.:||:..:...
  Fly   137 KVISFKSTMAQ---------------HDPETVLNFRWLNDYRQIGEVKQELKKRESEYIVYKDII 186

  Fly   540 VAVGTYNVNGGKHFRSIVFKDSLADWLLDCHALARSKALVDVNNP-------SENVDHPVDIYAI 597
            :...|:|||                          :|...|.|||       ||.   |.|||||
  Fly   187 IYCATWNVN--------------------------NKTCSDSNNPLRAWLACSEK---PPDIYAI 222

  Fly   598 GFEEI-----VDLNASNIMAASTDNAKLWAEELQKTISRDNDYVLLTYQQLVGVCLYIYIRPEHA 657
            |.:|:     ..||::.:.|..    |.|.:::..::..|.:|.:|...:||...|.:.:|.:..
  Fly   223 GLQELDTPTKAMLNSTQVQAIE----KQWIDKMMDSVHPDVEYEILMSHRLVATMLTVIVRKQLR 283

  Fly   658 PHIRDVAIDCVKTGLGGATGNKGACAIRFVLHGTSMCFVCAHFAAGQSQVAERNADYAEITRKLA 722
            .||.......|..|:....||||..||...|:..::|||.:|.||....|.|||.||..|...:.
  Fly   284 QHIIRCRPKSVARGIFNTLGNKGGVAISLQLNEGNICFVNSHLAAHMGYVEERNQDYNAIVEGIR 348

  Fly   723 FPMGRTLKSHDWVFWCGDFNYRIDMEKDELKECVRNGDLS------TVLEFDQLRKEQEAGNVFG 781
            |..|||:..||.:||.||.||||.....:    .|.|.||      .:|::||||:|...|..|.
  Fly   349 FDDGRTISDHDHIFWVGDLNYRIQEPPGQ----QRPGPLSDAQTYELLLQYDQLRQEMRRGKCFE 409

  Fly   782 EFLEGEITFDPTYKYDLFSDDYDTSEKQRAPAWTDRVLWRRRKALAEGDFAASAWNPGKLIHYGR 846
            .:.||||.|.||||||..:|:||:||||||||:.|||||:..:.             .:|.:...
  Fly   410 GYTEGEIKFRPTYKYDPGTDNYDSSEKQRAPAYCDRVLWKGTRI-------------EQLAYNSI 461

  Fly   847 SELKQSDHRPVIAIIDAEIMEIDQQRRRAVFEQVIRDLGPPDSTIVVHVLESSATGDEDGPTIYD 911
            .|::||||:||.|:...::...|:.:.:.|.|:|::.:...:              :::.|.|  
  Fly   462 MEIRQSDHKPVYAVFQVKVKTRDEVKYKRVQEEVLKAVDKRE--------------NDNQPQI-- 510

  Fly   912 ENVMSALITELSKMGEVTLVRYVEDTMWVTFRDGESALNASSKKSIQV---CGLDLILELKSKD- 972
             ||            |.|::.:           |....|..|.:...|   |.|.:....|.|| 
  Fly   511 -NV------------EKTVIDF-----------GTVRFNEPSTRDFNVYNNCPLPVDFSFKEKDI 551

  Fly   973 ------WQH--------LVDSEIELCTTNTIPLCANPVEHAQLLQAI 1005
                  |.|        |:||...:    .:.:.||....|.||:.|
  Fly   552 HAICEPWLHVDPRQDSLLIDSARSI----RLKMNANVRTIAGLLRKI 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynjNP_001246454.1 Syja_N 61..353 CDD:280532
INPP5c_Synj 538..863 CDD:197323 117/342 (34%)
DUF1866 862..1008 CDD:286093 30/162 (19%)
OcrlNP_001259153.1 PH-like 23..163 CDD:302622 18/105 (17%)
INPP5c_INPP5B 185..478 CDD:197327 117/342 (34%)
RhoGAP_OCRL1 614..823 CDD:239845
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447411
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5411
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11200
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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