DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Synj and Inpp5f

DIOPT Version :9

Sequence 1:NP_001246454.1 Gene:Synj / 37517 FlyBaseID:FBgn0034691 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_001101024.2 Gene:Inpp5f / 309008 RGDID:1305777 Length:1130 Species:Rattus norvegicus


Alignment Length:1240 Identity:265/1240 - (21%)
Similarity:441/1240 - (35%) Gaps:365/1240 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 GCLGALQLNAGESTVLFLVLVTGCVSMGKI-GDIEIFRITQTTFVSLQN---------------- 109
            |.:|.:||::  ....:|:|:.....:||: ||.|:.::|:...:||..                
  Rat    50 GVIGKIQLHS--DLPWWLILIRQKALVGKLPGDHEVCKVTKIAVLSLSEMEPQELELELCKKHHF 112

  Fly   110 -----------------------------AAPNEDKISE---------------VRKLLNSGTFY 130
                                         :|||:.|:.|               ::..::|.:||
  Rat   113 GINKPEKIVPSPDDSKFLLKTFTNIKSNVSAPNKKKVKESKEKEKLERRLLEELLKMFMDSESFY 177

  Fly   131 FAHTNASASASGASSYRFDITLCAQR--------RQQTQETDNRFFWNRMMHIHLMRFGI-DCQS 186
            ::.|             :|:|...||        |...|:.|:|||||:.|...|...|. |...
  Rat   178 YSLT-------------YDLTNSVQRQSTGEKDGRPLWQKVDDRFFWNKYMIQDLSEIGTPDVDF 229

  Fly   187 WLLQAMCGSVEVRTVYIGAKQA------------------------RAAIISRLSCERAGTRFNV 227
            |::..:.|.|::..:.:..:.:                        ..|:|||.|..|||.|:..
  Rat   230 WIIPIIQGFVQIEELVVNYEPSDDDKSSPETPPQEATCVDDIHPRFLVALISRRSRHRAGMRYKR 294

  Fly   228 RGTNDEGYVANFVETEQVIYVDGDVTSYVQTRGSVPLFWEQPGVQVGSHKVKLSRGFETSAAAFD 292
            ||.:..|.|||:|||||:|:|.....|::|||||||:||.|.|.:. :.:.:|.:..:.:...|.
  Rat   295 RGVDKNGNVANYVETEQLIHVHNHTLSFIQTRGSVPVFWSQVGYRY-NPRPRLDKSEKETVDCFC 358

  Fly   293 RHMSMMRQRYGYQTVVNLLGSSLVGSKEGEAMLSNEFQRHHGMSAHKDVPHVVFDYHQECRGGNF 357
            .|.....:.|..|.:||     ||.....|.::.:.:.:...:..:..:.:|.||:|:.|||..|
  Rat   359 AHFEEQLKIYKKQVIVN-----LVDQAGREKIIGDAYLKQVLLFNNPRLTYVSFDFHEHCRGMKF 418

  Fly   358 SALAKLKERIVACGANYGVFHASNGQVLREQFGVVRTNCLDCLDRTNCVQTYLGLDTLGIQLEAL 422
            ..:..|.:.|.....:..........|:.:|.|:.|.||:|||||||.||..:....:..||:.|
  Rat   419 ENVQTLTDAIHDIILDMKWCWVDQAGVICKQEGIFRVNCMDCLDRTNVVQAAIARVVMEQQLKKL 483

  Fly   423 KMGGKQQNIS-RFEEIFRQMWINNGNEVSKIYAGTGAIQG-----GSK-----LMDGARSAARTI 476
            .:...:|.:. :....::.||.|||:.:|:.||||.|::|     |.:     :.||..||.|..
  Rat   484 GVMPPEQPLPVKCNRTYQIMWANNGDSISRQYAGTAALKGDFTRTGERKLAGVMKDGVNSANRYY 548

  Fly   477 QNNLLDNSKQEAIDVLLVGSTLSSEL-----ADRARILLPSNMLHAPTTVLRELCKRYTEYVRPR 536
            .:...|..:|..|| |:.|..::.:|     .::....|......:...::.:|.:.|.:.:.| 
  Rat   549 LSRFKDAYRQAVID-LMQGIPVTEDLYSIFTKEKEHEALQKETQRSHQELISQLLQSYMQLLLP- 611

  Fly   537 MARVAVGTYNVNGGKHFRSIVFKDSLADW-LLDCHALARSKALVDV------NNPSENV---DHP 591
                  |....:||              | |:||.......|..||      :|.:..|   |..
  Rat   612 ------GDEKFHGG--------------WALIDCDPSLTDAAHRDVDVLLLLSNSAYYVAYYDDE 656

  Fly   592 VD-IYAIGFEEIVDLNASNIMAAST--DNAKLWAEELQKTISRDNDY------------------ 635
            || :.......:.||....|....|  ...|.....|..|......|                  
  Rat   657 VDKVSQYQRRSLEDLEKIEIGPEPTLFGKPKFSCMRLHYTCKEAGGYFHTLRAVPRSPEEDGKDT 721

  Fly   636 ------VLLTYQQLVGVCLYIYI------RPEHAPHIRDVAIDCVKTGLGGATGNKGACAIRFVL 688
                  :|...:|.:|  |::.|      |....|| .|:        :|..:.|:|:.|     
  Rat   722 LQCIAEMLQITKQAMG--LHVPIIERKLERKSSKPH-EDI--------IGIRSQNQGSLA----- 770

  Fly   689 HGTSMCFVCAHFAAGQSQV--AERNADYAEITRKLAFPMGRTLKSHDWVFWCGDF---NYRIDME 748
            .|.|  |:.:.|::...:|  .:.|.:...: |||                 |:|   ..:::..
  Rat   771 QGKS--FLMSKFSSLNQKVKQTKSNVNIGNL-RKL-----------------GNFTKPEVKVNFL 815

  Fly   749 KDELKECVRNGDLSTVLEFDQLRKEQEAGNVFGEFLEGEITFDPTYKYDLFSDDYDTSEKQRAPA 813
            |..||..:...|.|.        :..|...|.|..::||...|       .|.|.|:..      
  Rat   816 KPNLKVNLWKSDSSL--------ETMENPGVMGNKVQGESDGD-------VSSDNDSYH------ 859

  Fly   814 WTDRVLWRRRKALAEGDFAASAWNPGKLIHYGRSELKQSDH-RPVIAIIDAEIMEIDQQRRRAVF 877
             :|.:|...|.            ..||.:.........:|: .|...|| |....:..:.:.|..
  Rat   860 -SDELLTNSRS------------EEGKQLANSLESAGPTDYLLPSCGII-ASAPRLGSRSQSASS 910

  Fly   878 EQVIRDLGPPDSTIVVH------VLESSATGDEDGPTIYDENVMSALITELSKMGEVTLVRYVED 936
            ..|  .:..|....|.|      .|||..........|:       .:|..:|..:|...|:|: 
  Rat   911 TDV--SIHAPSEATVGHGHELGKGLESPLKKSPSADNIH-------TLTGFAKPMDVYCQRFVQ- 965

  Fly   937 TMWVTFRDGESALNASSKKSIQVCGLDLILELKSKDWQHLVDSEIELCTTNTIPLCANPVEHAQL 1001
                   |.::.:||.|:..        .:...|::..|.                .|||.:.:.
  Rat   966 -------DAQNKMNALSEVR--------AVAQNSEEGNHK----------------TNPVSNEET 999

  Fly  1002 LQAITPELPQRPKQPPTRPPARPPMPMSPKNSPRHLPHVGVISIVPKPAKPPMPPQPQSQPLIPS 1066
            ......::|.||.|.........|..:|                    .:|..|...|..|...|
  Rat  1000 QSESVEQMPSRPSQLNVSCSVTGPQLLS--------------------VEPAHPAVSQKTPGSGS 1044

  Fly  1067 PLQPQVAPPRPPAMDTTPSSKSQ----SPTELVSAS----SSTSSSGKT------------SPTA 1111
            .|....|     .:..||||:|.    ||...:.:|    ::.:.:|.|            ||..
  Rat  1045 SLLDLEA-----GLCVTPSSESSSRAVSPFAKIRSSMVQVANITQAGLTHGINLAVAKVQKSPAE 1104

  Fly  1112 PAVLS 1116
            |.|::
  Rat  1105 PEVVN 1109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynjNP_001246454.1 Syja_N 61..353 CDD:280532 90/384 (23%)
INPP5c_Synj 538..863 CDD:197323 70/373 (19%)
DUF1866 862..1008 CDD:286093 24/151 (16%)
Inpp5fNP_001101024.2 Syja_N 50..414 CDD:280532 90/384 (23%)
hSac2 594..695 CDD:289241 24/121 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339884
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D359616at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.850

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