DRSC/TRiP Functional Genomics Resources

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Protein Alignment Synj and cil-1

DIOPT Version :9

Sequence 1:NP_001246454.1 Gene:Synj / 37517 FlyBaseID:FBgn0034691 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_498783.1 Gene:cil-1 / 183643 WormBaseID:WBGene00086546 Length:398 Species:Caenorhabditis elegans


Alignment Length:417 Identity:93/417 - (22%)
Similarity:160/417 - (38%) Gaps:120/417 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   588 VDHPVDIYAIGFEEIVDLN---------ASNIMAASTDNAKLWAEELQKTISRDNDYVLLTYQQL 643
            :|....:.|||.:|:....         |:.|.:....|.::..  |.||....|..::...:||
 Worm    30 IDDHTHLVAIGLQEVAHSETIGGAVLTWATTIASWMNTNGRMVL--LAKTFQATNQVLIFGRKQL 92

  Fly   644 VGVCLYIYIRPEHAPHIRDVAIDCVKTGLGGATGNKGACAIRFVLHGT-SMCFVCAHFAAGQSQV 707
            :|             .|:.:.....:..:||.||:||:..:|..|... |:.||.:||..|....
 Worm    93 IG-------------QIKRIDYRFQRNTMGGLTGHKGSIGVRLQLASPYSIVFVDSHFIHGPENY 144

  Fly   708 AERNADYAEITRKLAFPMGRTLKSHDWVFWCGDFNYRIDMEKDELKECVRNGDLSTVLEF----D 768
            .:|...| ...|..:||..:::::   .||.||||:|::.:.:.:...::||   |.||.    :
 Worm   145 GKRVEQY-HTNRNCSFPEDKSVRA---AFWFGDFNFRVEEDVNTVIRKIKNG---THLELLDTRE 202

  Fly   769 QLRKEQEAGNVFGEFLEGEITFDPTYKYDLFSDDYDTSEKQRAPAWTDRVLWRRRKALAEGDFAA 833
            ||::.....:.|..|.|..:||:|||:..:.:.:.|   .:|.|:||||:|::     .:|....
 Worm   203 QLKRALVERDAFIGFHEQPVTFEPTYRVTVGTTEQD---GKRVPSWTDRILYK-----GDGITGL 259

  Fly   834 SAWNPGKLIHYGRSELKQSDHRPVIAIIDAEIMEIDQQRRRAVFEQVIRDLGPPDSTIVVHVLES 898
            |..|..|.:        .|||.||:|:.........:.:...:||.:                  
 Worm   260 SYTNNKKAV--------ASDHLPVVAMFRVTAPAAPKPQWEVIFEHL------------------ 298

  Fly   899 SATGDEDGPTIYDENVMSALITELSKMG--EVTLVRYVEDTMWVTFRDGESALNASSKKSIQVCG 961
                    ||.|         |.:..:|  :|..:.|.|:..:                      
 Worm   299 --------PTWY---------TSIPLVGRFQVNELYYKENGSY---------------------- 324

  Fly   962 LDLILELKSKDWQHLVDSEIELCTTNT 988
                     :||..:..|.|..|||.|
 Worm   325 ---------RDWIGVFPSSINDCTTAT 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynjNP_001246454.1 Syja_N 61..353 CDD:280532
INPP5c_Synj 538..863 CDD:197323 75/288 (26%)
DUF1866 862..1008 CDD:286093 18/129 (14%)
cil-1NP_498783.1 IPPc 1..284 CDD:214525 75/291 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5411
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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