DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Synj and Inpp5b

DIOPT Version :9

Sequence 1:NP_001246454.1 Gene:Synj / 37517 FlyBaseID:FBgn0034691 Length:1218 Species:Drosophila melanogaster
Sequence 2:XP_006502867.1 Gene:Inpp5b / 16330 MGIID:103257 Length:994 Species:Mus musculus


Alignment Length:609 Identity:174/609 - (28%)
Similarity:274/609 - (44%) Gaps:93/609 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   468 GARSAARTIQNNLLDNSKQEAIDVLLVGSTLSSELADRARILLPSNMLHAPTTVLRELCKRYTEY 532
            |||...:. :|:|...:|.:: |:.....:.:..::|:|.||.........|.|...|.::...|
Mouse   278 GARCPEKP-ENSLTRQNKSKS-DMSEKVRSATVTVSDKAHILSVQKFGLRDTIVRSHLVQKEENY 340

  Fly   533 VRPRMARVAVGTYNVNGGKHFRSIVFKDSLADWLLDCH-ALARSKALVDVNNPSENVDHPVDIYA 596
            ...:..|..||||||||...      |:.|..||  .| |||                  .|:|.
Mouse   341 TYIQNFRFFVGTYNVNGQSP------KECLRPWL--SHSALA------------------PDVYC 379

  Fly   597 IGFEEIVDLNASNIMAASTDNAKLWAEELQKTISRDNDYVLLTYQQLVGVCLYIYIRPEHAPHIR 661
            :||:|: ||:........|...:.|.:.:.:::..|..|..:.:.:|||:.|.:|::.|||.:|.
Mouse   380 VGFQEL-DLSKEAFFFHDTPKEEEWFKAVSESLHPDAKYAKVKFVRLVGIMLLLYVKQEHAAYIS 443

  Fly   662 DVAIDCVKTGLGGATGNKGACAIRFVLHGTSMCFVCAHFAAGQSQVAERNADYAEITRKLAFPM- 725
            :|..:.|.||:.|..||||..||||.||.||:|.|.:|.||...:...||.||.:|..::.||. 
Mouse   444 EVEAETVGTGIMGRMGNKGGVAIRFQLHNTSICVVNSHLAAHTEEYERRNQDYRDICSRMQFPQV 508

  Fly   726 -----GRTLKSHDWVFWCGDFNYRI-DMEKDELKECVRNGDLSTVLEFDQLRKEQEAGNVFGEFL 784
                 ..|:..||.:.|.||.|||| :::..::|:.|......|:...|||:.:..|..:|..|.
Mouse   509 DPSQPPLTINKHDVILWLGDLNYRIEELDVGKVKKLVEEKAFQTLYAHDQLKIQVAARTIFDGFT 573

  Fly   785 EGEITFDPTYKYDLFSDDYDTSEKQRAPAWTDRVLWRRRKALAEGDFAASAWNPGKLIHYGRSEL 849
            ||||||.||||||..|||:|||||.|||||.||:||:.:             |..:|.:.....|
Mouse   574 EGEITFQPTYKYDTGSDDWDTSEKCRAPAWCDRILWKGK-------------NITQLSYQSHMAL 625

  Fly   850 KQSDHRPVIAIIDAEIMEIDQQRRRAVFEQVIRDLGPPDSTIVVHVLESSATG----------DE 904
            |.|||:||.::.|..:..::::..|...|:::|.|...::..:..|..|....          ..
Mouse   626 KTSDHKPVSSVFDIGVRVVNEELYRKTLEEIVRSLDKMENANIPSVTLSKREFCFENVKYMQLQT 690

  Fly   905 DGPTIYDENVMSALITELSKMGEVTLVRYVEDTMWVTFRDGESALNASSKKSIQV---------- 959
            :..||::..| ......::|..|.:..:     .|:|.|..:..|...|...|::          
Mouse   691 ESFTIHNSQV-PCQFEFINKPDEESYCK-----QWLTARPSKGFLLPDSHVEIELELFVNKSTAT 749

  Fly   960 ---CGLD-----LILEL-KSKDWQHLVDSEIELCTTNTIPLC-ANPVEHAQLLQAITPELPQRPK 1014
               .|.|     |:|.| :.||:...|..       |.:|.| .:|:.....::....:||.:..
Mouse   750 KLNSGKDTIEDILVLHLERGKDYFLSVSG-------NYLPSCFGSPIHTLCYMREPILDLPLKTV 807

  Fly  1015 QPPTRPPARPPMPMSPKNSPRHLP 1038
            ...|....:.....|...:|..:|
Mouse   808 SDLTLMSVQTADDRSQLENPMEIP 831

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynjNP_001246454.1 Syja_N 61..353 CDD:280532
INPP5c_Synj 538..863 CDD:197323 123/332 (37%)
DUF1866 862..1008 CDD:286093 30/175 (17%)
Inpp5bXP_006502867.1 INPP5B_PH 1..150 CDD:374793
INPP5c_INPP5B 346..639 CDD:197327 123/332 (37%)
RhoGAP_OCRL1 773..991 CDD:239845 11/66 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5411
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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