DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Synj and sacm1l

DIOPT Version :9

Sequence 1:NP_001246454.1 Gene:Synj / 37517 FlyBaseID:FBgn0034691 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_001344516.1 Gene:sacm1l / 100497354 XenbaseID:XB-GENE-920710 Length:608 Species:Xenopus tropicalis


Alignment Length:550 Identity:165/550 - (30%)
Similarity:265/550 - (48%) Gaps:90/550 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 YGCLGALQLNAGESTVLFLVLVTGCVSMGKIGDI---EIFRITQTTFVSLQNA---------APN 113
            ||.||.::|.||    ::|:::|   ...|:||:   .|::.|....:|.:..         ..|
 Frog    57 YGILGTIRLVAG----MYLIVIT---RKKKVGDLLNHSIWKATDFDIISYKKTMLHLTDTQLQDN 114

  Fly   114 EDKISEVRKLLNSGTFYFAHTNASASASGASSYRFDITLCAQRRQQT----------QETDNRFF 168
            :..::.:..:|:...|||             |..:|:|...||...|          :..|.||.
 Frog   115 KAFLAMISHVLSVDGFYF-------------SVSYDLTHTLQRLSNTSPEFQEMSLLERADQRFV 166

  Fly   169 WNRMMHIHLMR-FGI--DCQSWLLQAMCGSVEVRTVYIGAKQARAAIISRLSCERAGTRFNVRGT 230
            ||.    ||:| |..  :.|.:.:..:.|.:.:.:..|..|.....:|||.||.|||.|:.|||.
 Frog   167 WNG----HLLREFSAQPEIQKFAIPVVHGFIAIHSCSINGKYFDWILISRRSCFRAGVRYYVRGI 227

  Fly   231 NDEGYVANFVETEQVIYVDGDVTSYVQTRGSVPLFWEQ-PGVQVGSHKVKLSRGFETSAAAFDRH 294
            :.||:.||||||||:::.:|:..|:||||||:|.:|.| |.::. ..|.::|:.. .....|.||
 Frog   228 DSEGHAANFVETEQIVHYNGNKASFVQTRGSIPFYWSQRPNLKY-KPKPQISKAV-NHMDGFQRH 290

  Fly   295 MSMMRQRYGYQTVVNLLGSSLVGSKEGEAMLSNEFQRHHGMSAHKDVPHVVFDYHQECRGGNFSA 359
            .......||.|.|:|     ||..|..|..|...|.:......:..:.::.||:|:||....:..
 Frog   291 FDSQIISYGKQVVLN-----LVNQKGSEKPLEQAFSQMVSGLGNGMLRYIAFDFHKECSRMRWDR 350

  Fly   360 LAKLKERIVACGANYGVFHA-SNGQVLREQFGVVRTNCLDCLDRTNCVQTYLGLDTLGIQLE--- 420
            |..|.:::.....::|.|.. |:|:|:.:|.|:.|:||:|||||||.||:.|...:|..||:   
 Frog   351 LQILVDQVSETQDDFGYFLVDSDGKVVSQQEGIFRSNCMDCLDRTNVVQSLLARRSLQFQLQRLG 415

  Fly   421 ALKMGGKQQNISRFEEIFRQMWINNGNEVSKIYAGTGAI-----QGGSK-----LMDGARSAART 475
            .|.:|.:.:...:||:|::..|.:|.|..:|.||||||:     :.|.:     ||||..|..|.
 Frog   416 VLHVGQRIEEQIQFEKIYKNAWADNANACAKQYAGTGALKTDFTRTGKRTQWGLLMDGWNSLMRY 480

  Fly   476 IQNNLLDNSKQEAIDVLLVGSTL-----SSEL---ADRARILLPSNMLHAPTTVLRELC-----K 527
            .:||..|..:|::||:.|...::     ||.|   .|...:.||..|:.|.:..:  :|     .
 Frog   481 YKNNFSDGFRQDSIDLFLGNYSVEEVYSSSPLHIQTDWKFLALPIIMVVAFSMCI--ICLLMAGD 543

  Fly   528 RYTEYVRPRM----ARVAVGTYNVNGGKHF 553
            .:||.:...:    |.:..||..:..||.|
 Frog   544 TWTETLAYVLFWGTASIGTGTIILYNGKDF 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynjNP_001246454.1 Syja_N 61..353 CDD:280532 93/317 (29%)
INPP5c_Synj 538..863 CDD:197323 5/15 (33%)
DUF1866 862..1008 CDD:286093
sacm1lNP_001344516.1 COG5329 33..518 CDD:227637 151/491 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D359616at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.