DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Synj and synj2

DIOPT Version :9

Sequence 1:NP_001246454.1 Gene:Synj / 37517 FlyBaseID:FBgn0034691 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_001135511.1 Gene:synj2 / 100216051 XenbaseID:XB-GENE-980087 Length:1553 Species:Xenopus tropicalis


Alignment Length:1341 Identity:536/1341 - (39%)
Similarity:748/1341 - (55%) Gaps:194/1341 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAMSKVIRVLEKSIAPSPHSVLLEHRNKSDSILFESHAVALLTQQETDVIRKQYTKVCDAYGCLG 65
            ||:||.::|..:. .|:|:|||||.||:.|.:||||..||.||..|.:|||.||.::.|||||||
 Frog     1 MALSKALKVHVRH-EPAPYSVLLESRNREDCLLFESGTVATLTPDEREVIRGQYERLQDAYGCLG 64

  Fly    66 ALQLNAGESTVLFLVLVTGCVSMGKIGDIEIFRITQTTFVSLQNAAPNEDKISEVRKLLNSGTFY 130
            .|.|.:|...:.||:||:||.|:|:|.|.|:::||.|.|..||.....|::::.:||:||||.||
 Frog    65 ELCLKSGNIPLNFLILVSGCSSVGRILDAEVYKITATDFCPLQEETKEEERVTALRKILNSGMFY 129

  Fly   131 FAHTNASASASGASSYRFDITLCAQRR--QQTQETDNRFFWNRMMHIHLMRFGIDCQSWLLQAMC 193
            |:..||.::        ||:|..||::  ..:.|:.|.|||||::|:.|..:.:.|..|||:.:|
 Frog   130 FSWPNAGSN--------FDLTHRAQKQAVNSSCESGNWFFWNRLLHVPLKHYQVSCADWLLKVIC 186

  Fly   194 GSVEVRTVYIGAKQARAAIISRLSCERAGTRFNVRGTNDEGYVANFVETEQVIYVDGDVTSYVQT 258
            |.||:||||...::|:|.:|||:||.|||.||::||.:|:|:|:|||||||.:|||.||:|:||.
 Frog   187 GGVEIRTVYASHRKAKACLISRISCARAGARFHIRGVDDDGHVSNFVETEQTVYVDDDVSSFVQI 251

  Fly   259 RGSVPLFWEQPGVQVGSHKVKLSRGFETSAAAFDRHMSMMRQRYGYQTVVNLLGSSLVGSKEGEA 323
            |||||:||||||:|||||.:||:||.|.:|.||||||.:::::||.|.:||||     .||.||.
 Frog   252 RGSVPMFWEQPGLQVGSHHLKLTRGLEANAPAFDRHMMLLKEQYGKQVLVNLL-----RSKGGEE 311

  Fly   324 MLSNEFQRHHGMSAH-KDVPHVVFDYHQECRGGNFSALAK-LKERIVACGANYGVFHASNGQVLR 386
            :||..|::....|.| .|||.:.|||||..:||....|.. ||.::......:|||...:....|
 Frog   312 VLSRAFKKLLWASLHADDVPMINFDYHQIVKGGKIEKLENLLKPQLKLDLEEFGVFTRGDNLTPR 376

  Fly   387 EQFGVVRTNCLDCLDRTNCVQTYLGLDTLGIQLEALKMGGKQQNISRFEEIFRQMWINNGNEVSK 451
            .|.|..|.||||||.|||.||:|:.|:.|..|||:|.:...:..:.||||.::.||..||:.:|.
 Frog   377 LQKGTFRINCLDCLHRTNSVQSYIALEVLRTQLESLGLVDMKSVMERFEESYKSMWTANGHNMSM 441

  Fly   452 IYAGTGAIQGGS---KLMDGARSAARTIQNNLLDNSKQEAIDVLLVGSTLSSELADRARILLPSN 513
            |:.|:.|::|.:   ||.||||:.:||||.|..|.:||||||::|:|...:.:.||:.|:|:.|:
 Frog   442 IFTGSRALEGKAKVGKLKDGARTVSRTIQTNFFDGAKQEAIDLMLMGDFFNEQYADKGRMLMDSS 506

  Fly   514 MLHAPTTVLRELCKRYTEYVRPRMARVAVGTYNVNGGKHFRSIVFKDS-LADWLLDCHALARSKA 577
            .|....:||:.:.:|..|:...:..|||:||:||||||.|||.:...| |.|||||...|:.:..
 Frog   507 ALLVIPSVLKSISERQLEFTNYKRTRVAMGTWNVNGGKQFRSKILSTSELTDWLLDSPKLSGTPD 571

  Fly   578 LVDVNNPSENVDHPVDIYAIGFEEIVDLNASNIMAASTDNAKLWAEELQKTISRDNDYVLLTYQQ 642
            ..|      :..:|.||:|:||||:|:|:|.||::|||.|.|:|||::||.:||.:.|:|||..|
 Frog   572 FQD------DESNPPDIFAVGFEEMVELSAGNIVSASTTNRKVWAEQIQKALSRSHRYILLTSGQ 630

  Fly   643 LVGVCLYIYIRPEHAPHIRDVAIDCVKTGLGGATGNKGACAIRFVLHGTSMCFVCAHFAAGQSQV 707
            ||||||::::||.|.|.|||||.|.|||||||.||||||.||||..:.||.||:|:||.|||:||
 Frog   631 LVGVCLFVFVRPYHMPFIRDVATDTVKTGLGGKTGNKGAVAIRFQFYSTSFCFICSHFTAGQNQV 695

  Fly   708 AERNADYAEITRKLAFPMGRTLKSHDWVFWCGDFNYRIDMEKDELKECVRNGDLSTVLEFDQLRK 772
            .|||.||.|||:||:|||||.:.|||:||||||||||:|:..||:...:|..|...:||:|||:.
 Frog   696 KERNEDYKEITQKLSFPMGRNVFSHDYVFWCGDFNYRLDLPYDEVFYYIRRQDWKKLLEYDQLQL 760

  Fly   773 EQEAGNVFGEFLEGEITFDPTYKYDLFSDDYDTSEKQRAPAWTDRVLWRRRK----------ALA 827
            ::.|..:|.:|.||.|.|.||||||:.|:.||||||.|.|||||||||.|:|          .|.
 Frog   761 QKSASKIFKDFYEGTIHFGPTYKYDIGSEAYDTSEKCRTPAWTDRVLWWRKKWPFEKSARDINLL 825

  Fly   828 EGDFAAS-----AWNPGKLIHYGRSELKQSDHRPVIAIIDAEIMEIDQQRRRAVFEQVIRDLGPP 887
            :.|...|     .|.||.|::|||:||..||||||:|:::.|:.|:|...|..||:::....||.
 Frog   826 DSDLDFSTKIKHTWTPGALMYYGRAELPYSDHRPVLAMVEVEVQEVDVTSRERVFQEITSSQGPL 890

  Fly   888 DSTIVVHVLESSATGDEDGPTIYDENVMSALITELSKMGEVTLVRYVEDTMWVTFRDGESALNAS 952
            |:|:.|.:|..:|....|.|    |::.:.|:......|.|.|||.:...|.|||.|..:|||..
 Frog   891 DATVEVRILFPTAEEKADFP----EDISTELVKTFQTYGNVILVRLIRGQMIVTFEDSRTALNVL 951

  Fly   953 SKKSIQVCGLDLILELKSKDWQHLVDSEI------------------------------------ 981
            ....::|.|..:.:..|::||...:..||                                    
 Frog   952 DLDGLKVNGKTIKIRPKTEDWLKGLHEEIARNRDSIAPMSPNANSCLLEENFDFTSLDYESEGDI 1016

  Fly   982 -----------ELCTTNTIPLCANPVEHAQL---------------------LQAITPEL----- 1009
                       .|.|.....:|..|.:.:..                     |.|:..||     
 Frog  1017 LDDDADDLMPQHLETNKPGAVCDRPADDSVACAVRAPQVNSKKPHSFKDDADLMALKKELEAVGE 1081

  Fly  1010 ------------PQRPKQPPTRPPARPPMPMSPKNSPRHLPHVGVISIV-PKPAKPPMPPQPQSQ 1061
                        |...:.||.|||.|||.|.|...|       .|:.|. |....|..|....|.
 Frog  1082 FRSRSPSRSLSVPHASRPPPQRPPQRPPPPKSTHQS-------SVVQIAKPLSGAPQYPSSGMSG 1139

  Fly  1062 PLIPSPLQPQVAPPRPPA-------MDTTPSSKSQSPTELVSASSS----------TSSSGKTSP 1109
            ...|..::...|.....|       ||.:...:....|.:...:||          .|:....|.
 Frog  1140 ISKPYNVKQIKATTTQEAEEAIRWLMDNSKEKQQVGQTGVRPQNSSLKEKPKSVSLNSTQKNVSA 1204

  Fly  1110 TAPAVLSGPPTPPRQMQSKQATPVSTPTRQVGSPKDPIPSDTAYETASNIYEEIQEDVPAPRHPP 1174
            |.||::  |..||..:.|.:..|:..      |...|.||....:.|:      ::|        
 Frog  1205 TEPALV--PQRPPPMVPSMKPVPIQK------SEAKPEPSFHLKQKAN------EQD-------- 1247

  Fly  1175 PAGPPPVIGAPMGPPPPL---PNRRGPPPIPNRSGNAPPLP 1212
                 ||.|.|..|.|.:   .:...||.:       ||:|
 Frog  1248 -----PVCGVPAKPQPHVDVFEHASMPPAV-------PPIP 1276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynjNP_001246454.1 Syja_N 61..353 CDD:280532 147/294 (50%)
INPP5c_Synj 538..863 CDD:197323 187/340 (55%)
DUF1866 862..1008 CDD:286093 43/213 (20%)
synj2NP_001135511.1 Syja_N 60..342 CDD:280532 147/294 (50%)
INPP5c_Synj2 531..863 CDD:197333 186/337 (55%)
RRM_SF 876..1010 CDD:302621 34/137 (25%)
TonB_N <1206..1280 CDD:292650 24/105 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 411 1.000 Domainoid score I673
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 918 1.000 Inparanoid score I359
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D359616at2759
OrthoFinder 1 1.000 - - FOG0002172
OrthoInspector 1 1.000 - - otm49045
Panther 1 1.100 - - O PTHR11200
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1445
SonicParanoid 1 1.000 - - X1883
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.100

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