DRSC/TRiP Functional Genomics Resources

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Protein Alignment Synj and sh2d1ab

DIOPT Version :9

Sequence 1:NP_001246454.1 Gene:Synj / 37517 FlyBaseID:FBgn0034691 Length:1218 Species:Drosophila melanogaster
Sequence 2:XP_001920648.3 Gene:sh2d1ab / 100148259 ZFINID:ZDB-GENE-091204-326 Length:108 Species:Danio rerio


Alignment Length:111 Identity:29/111 - (26%)
Similarity:42/111 - (37%) Gaps:35/111 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 VEVRTVYIGAKQARAAIISRLSCERAGTRFNVRGTNDEGYVANFVETEQV-------IYVDGDVT 253
            :|..:||.||       |||..||   .|.|..| .|..|:..  ::|.|       :...|.|.
Zfish     1 MESLSVYHGA-------ISREMCE---MRLNEAG-KDGSYLIR--DSESVAGAYCLCVLCKGFVY 52

  Fly   254 SY---VQTRGSVPLFW---EQPGVQVGSHKVKLSRGFETSAAAFDR 293
            :|   ..:.||    |   ..||     ...:|.|..:...:||::
Zfish    53 TYRLQKDSAGS----WAAETAPG-----QTKRLFRKVKNLISAFEK 89

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynjNP_001246454.1 Syja_N 61..353 CDD:280532 29/111 (26%)
INPP5c_Synj 538..863 CDD:197323
DUF1866 862..1008 CDD:286093
sh2d1abXP_001920648.3 SH2_SAP1a 2..103 CDD:198263 29/110 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170579679
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5411
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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