DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9308 and Tmed5

DIOPT Version :9

Sequence 1:NP_611629.1 Gene:CG9308 / 37507 FlyBaseID:FBgn0034681 Length:203 Species:Drosophila melanogaster
Sequence 2:NP_083152.1 Gene:Tmed5 / 73130 MGIID:1921586 Length:229 Species:Mus musculus


Alignment Length:222 Identity:57/222 - (25%)
Similarity:109/222 - (49%) Gaps:30/222 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLSAIVLVLVLFQAACGFIVTLDAHETM--------CFYDHANVSDKVTVSFEVMEGGFKDVGVE 57
            :|||  |...|.:.|.||..:||:..|.        |||....:...:.:.::|::||..|:...
Mouse    13 LLSA--LPAALLRGAAGFTPSLDSDFTFTLPAGRKECFYQPMPLKASLEIEYQVLDGGELDIDFH 75

  Fly    58 IAGPDDDRLHHSKQDTMGSFTFTAMKEGRYQLCFDNKMSTMTPKILMFQF---HVARAIEFYMDS 119
            :..|:...|...::.:.|..|... ::|.|..||||..||::.|::.|:.   ::...::...|.
Mouse    76 LTSPEGRTLVFEQRKSDGVHTIET-EDGDYMFCFDNTFSTISEKVIFFELILDNMGEEVQGQEDW 139

  Fly   120 SK----------RVDDVIEQATVQSMINQLSAKLGAVKMEQEYMHFRYRGHLEVSDMVELRVLAW 174
            .|          :::|::|  ::.|:.::|| |.|.::........|.| :::.|:..  ||..|
Mouse   140 KKYITNTDVLEMKLEDILE--SINSIKSRLS-KSGHIQTLLRAFEARDR-NIQESNFD--RVNFW 198

  Fly   175 SIFGPMMLIITAVLEVYYLKHFFEVKR 201
            |:...|::::.:.::||.||..||.||
Mouse   199 SVVNLMVMVVVSAIQVYTLKSLFEDKR 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9308NP_611629.1 EMP24_GP25L 17..198 CDD:279450 47/201 (23%)
Tmed5NP_083152.1 EMP24_GP25L 35..222 CDD:279450 43/193 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000272
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1510
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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