DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9308 and tmed1a

DIOPT Version :9

Sequence 1:NP_611629.1 Gene:CG9308 / 37507 FlyBaseID:FBgn0034681 Length:203 Species:Drosophila melanogaster
Sequence 2:NP_001003487.1 Gene:tmed1a / 445093 ZFINID:ZDB-GENE-040801-229 Length:226 Species:Danio rerio


Alignment Length:202 Identity:52/202 - (25%)
Similarity:86/202 - (42%) Gaps:25/202 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 FIVTLDAHETMCFYDHANVSDKVTVSFEVMEGGFKDVGVEIAGPDDDRLHHSKQDTMGSFTFTAM 82
            |...|.|..|.||:..|..:..:.|.::|:.|...|||..:..|...||....:.:.|..|..:.
Zfish    32 FTFLLPAGATECFFQTATKNSSMEVEYQVIAGSGLDVGFTLISPRGYRLVSDFRKSDGIHTVDST 96

  Fly    83 KEGRYQLCFDNKMSTMTPKILMFQFHVARAIEFYMDSSKRVDDVIEQ-ATVQSMINQLSAKLGAV 146
            :||.|::||||..|.::.|::.        :|..||..:..|:..|. |.:....:.|..||..:
Zfish    97 EEGDYRICFDNSFSRISEKMVY--------VEVIMDGPEGEDEDDEDWAALAEPEDSLEYKLEDI 153

  Fly   147 KMEQEYMH---------------FRYRGHLEVSDMVELRVLAWSIFGPMMLIITAVLEVYYLKHF 196
            :...:.:|               |..|....:.|.: .||..||....:::|..|:.:||.|:..
Zfish   154 RDSMDAVHKSLERSRQLQTTLRAFEARDRYLLEDNL-WRVSFWSCASLLVMISVALTQVYTLRRL 217

  Fly   197 FEVKRVV 203
            |..|..|
Zfish   218 FNDKHKV 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9308NP_611629.1 EMP24_GP25L 17..198 CDD:279450 49/195 (25%)
tmed1aNP_001003487.1 EMP24_GP25L 31..219 CDD:279450 49/195 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000272
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1510
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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