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Protein Alignment CG9308 and Tmed3

DIOPT Version :9

Sequence 1:	NP_611629.1	Gene:	CG9308 / 37507	FlyBaseID:	FBgn0034681	Length:	203	Species:	Drosophila melanogaster
Sequence 2:	NP_001004249.1	Gene:	Tmed3 / 300888	RGDID:	1303327	Length:	221	Species:	Rattus norvegicus

Alignment Length:	212	Identity:	53/212 - (25%)
Similarity:	94/212 - (44%)	Gaps:	18/212 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MLSAIVLVLVL-FQAACGFIVTLDAHET--MCFYDHANVSDKVTVSFEVMEGGFKDVGVEIAGPD 62
            ||..::|:|:| .:...|..:|.:..:.  .||::......|.::.::|:.||..||...:..|.
  Rat    13 MLMLLLLLLLLRAERLRGAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPM 77

  Fly    63 DDRLHHSKQDTMGSFTFTAMKEGRYQLCFDNKMSTMTPKILMFQFHVARAIEFYMDSSKRVDDVI 127
            .:.::...:....|||:....:|.|:.||.|:.||.:.|.:.|.|.|........|...||..:.
  Rat    78 GNIIYRETKKQYDSFTYKTEVKGVYRFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALT 142

  Fly   128 EQATVQSMINQLSAKLGAVK-MEQEYMHFRYRGHLEVSDM-----VELRVLAWSIFGPMMLIITA 186
            :..:....|::      |:| :.....|:|.|   |..|.     :..||..||:...:.|.:.:
  Rat   143 QMESACVTIHE------ALKTVIDSQTHYRLR---EAQDRARAEDLNSRVSYWSVGETIALFVVS 198

  Fly   187 VLEVYYLKHFFEVKRVV 203
            ..:|..||.||..||.:
  Rat   199 FSQVLLLKSFFTEKRPI 215

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.