DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9308 and Tmed7

DIOPT Version :9

Sequence 1:NP_611629.1 Gene:CG9308 / 37507 FlyBaseID:FBgn0034681 Length:203 Species:Drosophila melanogaster
Sequence 2:NP_001099228.1 Gene:Tmed7 / 252889 RGDID:727954 Length:226 Species:Rattus norvegicus


Alignment Length:206 Identity:65/206 - (31%)
Similarity:101/206 - (49%) Gaps:14/206 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LSAIVLVLVLFQAACGFIVTLDAHET--MCFYDHANVSDKVTVSFEVMEGGFKDVGVEIAGPDDD 64
            |.|::|:|:|...:.|..:|.:..:.  .|||:......|.|:.|:|:.||..||...:..||..
  Rat    21 LLALLLLLLLPGPSGGSEITFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDVDCRLEDPDGK 85

  Fly    65 RLHHSKQDTMGSFTFTAMKEGRYQLCFDNKMSTMTPKILMFQFHVARAIEFYMDSSKRVDDVIEQ 129
            .|:...:....||||||.|.|.|:.||.|:.||.|.|.:.|.|.|......: .|..||..:.:.
  Rat    86 VLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLF-PSENRVSALTQM 149

  Fly   130 ATVQSMINQLSAKLGAVKMEQEYM-HFRYR---GHLEVSDMVELRVLAWSIFGPMMLIITAVLEV 190
            .:....|::      |:|...:|. |||.|   |.....|: ..||..||:...::|::.::.:|
  Rat   150 ESACVSIHE------ALKSVIDYQTHFRLREAQGRSRAEDL-NTRVAYWSVGEALILLVVSIGQV 207

  Fly   191 YYLKHFFEVKR 201
            :.||.||..||
  Rat   208 FLLKSFFSDKR 218

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG9308NP_611629.1 EMP24_GP25L 17..198 CDD:279450 57/186 (31%)
Tmed7NP_001099228.1 EMP24_GP25L 38..214 CDD:395878 55/183 (30%)
COPI vesicle coat-binding. /evidence=ECO:0000255 213..226 4/6 (67%)