DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9308 and tmed-4

DIOPT Version :10

Sequence 1:NP_611629.1 Gene:CG9308 / 37507 FlyBaseID:FBgn0034681 Length:203 Species:Drosophila melanogaster
Sequence 2:NP_507861.1 Gene:tmed-4 / 180307 WormBaseID:WBGene00013360 Length:211 Species:Caenorhabditis elegans


Alignment Length:196 Identity:47/196 - (23%)
Similarity:84/196 - (42%) Gaps:27/196 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 ETMCFYDHANVSDKVTVSFEVM--------EGGFKDVG--VEIAGPDDDRLHHSKQDTMGSFTFT 80
            |..||.:.......||.:::|.        .|.:.::|  ||:..|:|..:........|.||||
 Worm    25 EKKCFIEEIPDETMVTGNYKVQLYDPNTKGYGDYPNIGMHVEVKDPEDKVILSKLYTAEGRFTFT 89

  Fly    81 AMKEGRYQLCFDNKMSTMTPKILMFQFHVARAIEFYMD--SSKRVDDVIEQA------TVQSMIN 137
            :...|.:.:|..:..:..        |:.|: :..::|  :.....|..:.|      .:|..|.
 Worm    90 SNTPGEHVICIYSNSTAW--------FNGAQ-LRVHLDIQAGDHAQDYAQIAQKDKLNELQLRIR 145

  Fly   138 QLSAKLGAVKMEQEYMHFRYRGHLEVSDMVELRVLAWSIFGPMMLIITAVLEVYYLKHFFEVKRV 202
            ||..::..:..||.|..:|.....:.|:....||..|||...::|.||...::.:|:.|||.|::
 Worm   146 QLLDQVDQITKEQNYQRYREERFRQTSESTNSRVFYWSIAQVVVLAITGAWQMRHLRGFFEAKKL 210

  Fly   203 V 203
            |
 Worm   211 V 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9308NP_611629.1 EMP24_GP25L 17..198 CDD:426051 43/189 (23%)
tmed-4NP_507861.1 EMP24_GP25L 16..206 CDD:426051 43/189 (23%)

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