DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gr58b and Gr28b

DIOPT Version :9

Sequence 1:NP_523808.2 Gene:Gr58b / 37502 FlyBaseID:FBgn0041238 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_995642.1 Gene:Gr28b / 117496 FlyBaseID:FBgn0045495 Length:470 Species:Drosophila melanogaster


Alignment Length:442 Identity:84/442 - (19%)
Similarity:165/442 - (37%) Gaps:99/442 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LHPKLGRVMNVVYYHSVV-FALMSTTLRIRSCRKCLRLEKVSRTYTIYSFFVGI-----FLF--- 57
            |:..|..|.:|.|.|.:. |.:...|   ::.:|.::       .||:.:..||     |:|   
  Fly    41 LYECLRPVFHVTYIHGLTSFYISCDT---KTGKKAIK-------KTIFGYINGIMHIAMFVFAYS 95

  Fly    58 LNLYFMVPRIMEDGYMKYNIVLQWNFFVMLFLRAIAVVSCYGTLWLKRHKIIQLYKYSLIYWKRF 122
            |.:|.....:.  .|...:.:..:...:.:....|.|...|.|.::..|::              
  Fly    96 LTIYNNCESVA--SYFFRSRITYFGDLMQIVSGFIGVTVIYLTAFVPNHRL-------------- 144

  Fly   123 GHITRAIVDKKELLD--LQESLARIMIRKII-----LLYSAFLCSTVLQYQLLSV-----INPQI 175
                ...:.|...:|  ||....:||..|::     :|.|.||.:.:......||     :.|.:
  Fly   145 ----ERCLQKFHTMDVQLQTVGVKIMYSKVLRFSYMVLISMFLVNVLFTGGTFSVLYSSEVAPTM 205

  Fly   176 FLAFCARLTHFLHFLCVKMGFFGVLVLLNHQFLVIHLAINALHGRKARKKWKALRSVAAMHLKTL 240
            .|.|...:.|.:  :.:.:..|.....|....||:   :|.:....|. :|.. ||:.|::.|..
  Fly   206 ALHFTFLIQHTV--IAIAIALFSCFTYLVEMRLVM---VNKVLKNLAH-QWDT-RSLKAVNQKQR 263

  Fly   241 RL-ARRIFDMFDI---------------------ANATV---FINMFMTAINILYHAVQYS---- 276
            .| ....|.|:.|                     |.||.   |....:|.|:|.:..:.:.    
  Fly   264 SLQCLDSFSMYTIVTKDPAEIIQESMEIHHLICEAAATANKYFTYQLLTIISIAFLIIVFDAYYV 328

  Fly   277 ----------NSSIKSNGWGILFGNGLIVFNFWGTMALMEMLDSVVTSCNNTGQQLRQLSDLPKV 331
                      .|..|:..:...|...:|:: ....::::|..:..:.....||..:..|.:..| 
  Fly   329 LETLLGKSKRESKFKTVEFVTFFSCQMILY-LIAIISIVEGSNRAIKKSEKTGGIVHSLLNKTK- 391

  Fly   332 GPKMQRELDVFTMQLRQNRLVYKICGIVELDKPACLSYIGSILSNVIILMQF 383
            ..:::.:|..|:|||...::.:...|:..:|:....:..|::.:.:|||:||
  Fly   392 SAEVKEKLQQFSMQLMHLKINFTAAGLFNIDRTLYFTISGALTTYLIILLQF 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gr58bNP_523808.2 7tm_7 12..385 CDD:285581 81/432 (19%)
Gr28bNP_995642.1 7tm_7 45..443 CDD:285581 81/436 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR21143
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.