DRSC/TRiP Functional Genomics Resources

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Protein Alignment KCND1 and kcnd1

DIOPT Version :10

Sequence 1:NP_004970.3 Gene:KCND1 / 3750 HGNCID:6237 Length:647 Species:Homo sapiens
Sequence 2:NP_001119942.1 Gene:kcnd1 / 100001681 ZFINID:ZDB-GENE-081105-40 Length:632 Species:Danio rerio


Alignment Length:647 Identity:506/647 - (78%)
Similarity:554/647 - (85%) Gaps:15/647 - (2%)


- Green bases have known domain annotations that are detailed below.


Human     1 MAAGLATWLPFARAAAVGWLPLAQQPLPPAPGVKASRGDEVLVVNVSGRRFETWKNTLDRYPDTL 65
            ||||:||||||||||||||||||::.:|..|..|.:|.||:|.|||||.||:|||||||||||||
Zfish     1 MAAGVATWLPFARAAAVGWLPLAKKTMPKPPIDKKNRNDEILFVNVSGLRFQTWKNTLDRYPDTL 65

Human    66 LGSSEKEFFYDADSGEYFFDRDPDMFRHVLNFYRTGRLHCPRQECIQAFDEELAFYGLVPELVGD 130
            ||||||||||:.|:.||||||||:||||:||||||||||.|||||||||||||||||:||:::||
Zfish    66 LGSSEKEFFYNEDTQEYFFDRDPEMFRHILNFYRTGRLHYPRQECIQAFDEELAFYGIVPDIIGD 130

Human   131 CCLEEYRDRKKENAERLAEDEEAEQAGDGPALPAGSSLRQRLWRAFENPHTSTAALVFYYVTGFF 195
            ||:||||||||||.||||.|.|||.|.|.| ||..|:.|:|||||||||||||.|||||||||||
Zfish   131 CCMEEYRDRKKENQERLAVDTEAEMATDTP-LPPHSTHRERLWRAFENPHTSTMALVFYYVTGFF 194

Human   196 IAVSVIANVVETIPCRGSARRSSREQPCGERFPQAFFCMDTACVLIFTGEYLLRLFAAPSRCRFL 260
            ||||||||||||:||| ..:.|.::.||||::..||||||||||||||.|||:|||||||||:|:
Zfish   195 IAVSVIANVVETVPCR-PLKGSKKDLPCGEKYSLAFFCMDTACVLIFTFEYLMRLFAAPSRCKFM 258

Human   261 RSVMSLIDVVAILPYYIGLLVPKNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASE 325
            |||||:||||||:||||||::|:|:||||||||||||||||||||||||||||||||||||||||
Zfish   259 RSVMSVIDVVAIMPYYIGLVMPENEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASE 323

Human   326 LGFLLFSLTMAIIIFATVMFYAEKGTNKTNFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGS 390
            ||||||||||||||||||||||||||..||||||||:||||||||||||||||||:|||||||||
Zfish   324 LGFLLFSLTMAIIIFATVMFYAEKGTKGTNFTSIPASFWYTIVTMTTLGYGDMVPNTIAGKIFGS 388

Human   391 ICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQQKVRLARIRLAKSGTTNAFLQYKQNGGL 455
            |||||||||||||||||||||||||||||||||.|||||||||||||||.||||||||||:.||.
Zfish   389 ICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKMRAQQKVRLARIRLAKKGTTNAFLQYKEEGGF 453

Human   456 EDSGSGEEQALCVRNRSAFEQQHHHLLHCLEKTTCHEFTDELTFSEALGAVSPGGRTSRSTSVSS 520
            .|  ...:.|||::|||:||.|||||||||||||.|||||||||||.....|.|.|||||||:||
Zfish   454 HD--RDHDGALCLKNRSSFEHQHHHLLHCLEKTTNHEFTDELTFSEMCMTESVGYRTSRSTSISS 516

Human   521 QPVGPGSLLSSCCPRRAKRRAIRLANSTASVSRGSMQELDMLAGLRRSHAPQSRSSLNAKPHDSL 585
            |.    .:.:||||||||||||||||||.||||||:||||.|...:.:..|||||||||:..| |
Zfish   517 QQ----GVSTSCCPRRAKRRAIRLANSTVSVSRGSVQELDTLHVHKTTIRPQSRSSLNARTED-L 576

Human   586 DLNCDSRDFVAAIISIPTPPANTPDESQPSSPGGGGRAGSTLRNSSLGTPCLFPETVKISSL 647
            .||||.|||.|||||||||||||||||.|.||...|    .||||.  :.....||||||||
Zfish   577 KLNCDDRDFTAAIISIPTPPANTPDESLPPSPAIPG----ILRNSR--SSSFTHETVKISSL 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCND1NP_004970.3 Interaction with KCNIP1, KCNIP2, and other family members. /evidence=ECO:0000250|UniProtKB:Q63881 2..20 16/17 (94%)
BTB_POZ 6..143 CDD:453885 109/136 (80%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 144..163 11/18 (61%)
Ion_trans 185..417 CDD:459842 203/231 (88%)
S4-S5 linker. /evidence=ECO:0000250|UniProtKB:P63142 310..323 12/12 (100%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 372..377 4/4 (100%)
DUF3399 470..550 CDD:463381 59/79 (75%)
Required for dendritic targeting. /evidence=ECO:0000250|UniProtKB:Q63881 474..489 13/14 (93%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 506..531 12/24 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 601..634 20/32 (63%)
kcnd1NP_001119942.1 BTB_POZ_KCND1 6..143 CDD:349724 109/136 (80%)
Ion_trans 184..415 CDD:459842 203/231 (88%)
DUF3399 466..542 CDD:463381 59/79 (75%)

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