DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PpN58A and gsp-3

DIOPT Version :9

Sequence 1:NP_477384.1 Gene:PpN58A / 37493 FlyBaseID:FBgn0025573 Length:324 Species:Drosophila melanogaster
Sequence 2:NP_491429.1 Gene:gsp-3 / 172082 WormBaseID:WBGene00021113 Length:305 Species:Caenorhabditis elegans


Alignment Length:300 Identity:144/300 - (48%)
Similarity:210/300 - (70%) Gaps:3/300 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 INLDQIIAKLKLIGEIGSVVQISV--REIEAVCSRAREVLLKQPTLLEIPAPINLLGDIHGQYLN 84
            :::|.::::|..:|..|..:..||  :|::..|:.|:.|...|.:|||:..||.:.|||||||.:
 Worm     5 MDVDNLMSRLLNVGMSGGRLTTSVNEQELQTCCAVAKSVFASQASLLEVEPPIIVCGDIHGQYSD 69

  Fly    85 LLRYFESNGYPPDSVYLLLGDYVDRGKQSIETLTLLLALKARYPTKFYLLRGNHECSSINHFYGF 149
            |||.|:.||:|||..:|.||||||||:|:|||:.|:|..|.:||..|::|||||||.:||..|||
 Worm    70 LLRIFDKNGFPPDVNFLFLGDYVDRGRQNIETICLMLCFKIKYPENFFMLRGNHECPAINRVYGF 134

  Fly   150 YDECKRRY-TVKLWRTFVDCYNCLPLAAIIEENIFCCHGGLSPHLFSMQQIREIRRPIEIPESGL 213
            |:||.||| :.:||..|.|.:|.:||..:|...|.|.||||||||.::.|:|::.||.:.|...:
 Worm   135 YEECNRRYKSTRLWSIFQDTFNWMPLCGLIGSRILCMHGGLSPHLQTLDQLRQLPRPQDPPNPSI 199

  Fly   214 ICDILWSDPDLRIMGWGPNERGVSHTFGSDVVSAFLHRFKLNLICRGHQVVEDGYEFFAKRQLIT 278
            ..|:||:|||..:.||..|.||||:.||.|||:....|..::|:.|.||||:|||||||.::::|
 Worm   200 GIDLLWADPDQWVKGWQANTRGVSYVFGQDVVADVCSRLDIDLVARAHQVVQDGYEFFASKKMVT 264

  Fly   279 IFSAPNYCGEFDNAGAMMCINQDLLCTFRVQRPILSEQRR 318
            |||||:|||:|||:.|.|.::::::|||.:.:|.....||
 Worm   265 IFSAPHYCGQFDNSAATMKVDENMVCTFVMYKPTPKSMRR 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpN58ANP_477384.1 PTZ00480 22..311 CDD:185658 141/291 (48%)
MPP_superfamily 23..311 CDD:301300 141/290 (49%)
gsp-3NP_491429.1 MPP_superfamily 6..297 CDD:301300 141/290 (49%)
PP2Ac 29..299 CDD:197547 136/269 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0639
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53795
OrthoDB 1 1.010 - - D327461at33208
OrthoFinder 1 1.000 - - FOG0000018
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.830

Return to query results.
Submit another query.