DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl2 and Cd163

DIOPT Version :9

Sequence 1:NP_523806.2 Gene:Loxl2 / 37485 FlyBaseID:FBgn0034660 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_001163866.1 Gene:Cd163 / 93671 MGIID:2135946 Length:1159 Species:Mus musculus


Alignment Length:355 Identity:104/355 - (29%)
Similarity:139/355 - (39%) Gaps:110/355 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 GAIRLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCRQLGFPGMRRYTRSGFFGPARRRF 123
            |.:|||||.....|.:||.|.|.||.||||.||.|:|::||:||........|.|.:||......
Mouse   717 GQLRLVGGGGRCAGRVEVYHEGSWGTVCDDNWDMTDANVVCKQLDCGVAINATGSAYFGEGAGAI 781

  Fly   124 WMDNLFCEGHEQELVDCHFEGWGENDCEPGEAAGVVCYP-----------PENA----------- 166
            |:|.:.|.|.|..:..||..|||.::|...|.|||:|..           .||.           
Mouse   782 WLDEVICTGKESHIWQCHSHGWGRHNCRHKEDAGVICSEFMSLRLTNEAHKENCTGRLEVFYNGT 846

  Fly   167 --------LIPMAT----------------PIIRDE---------------------DLPKYPIH 186
                    :.|...                ||..|:                     ..|..|..
Mouse   847 WGSIGSSNMSPTTVGVVCRQLGCADNGTVKPIPSDKTPSRPMWVDRVQCPKGVDTLWQCPSSPWK 911

  Fly   187 SRSRL------------YVRLRGGRSRIEGRVEVSLDGGRWGSVCADGWSLLEANVVCRQLGLGY 239
            .|...            .:||:.|.:...||||: ...|.||:||.|.|.|.:|.|||:|||.|.
Mouse   912 QRQASPSSQESWIICDNKIRLQEGHTDCSGRVEI-WHKGSWGTVCDDSWDLNDAKVVCKQLGCGQ 975

  Fly   240 ASEAFQTDFFG-GFNVSRPV-LSGSECYGNETEL----------ADCLH-HDASQGIISC----- 286
            |.:|.:...|| |   :.|: |:..:|.|||:.|          :||.| .|||   |.|     
Mouse   976 AVKALKEAAFGPG---TGPIWLNEIKCRGNESSLWDCPAKPWSHSDCGHKEDAS---IQCLPKMT 1034

  Fly   287 ---HGNRQH---VAAVICDYIAPDLVVDYL 310
               |....|   .|.::|..|...|::.:|
Mouse  1035 SESHHGTGHPTLTALLVCGAILLVLLIVFL 1064

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl2NP_523806.2 SR 61..161 CDD:214555 43/99 (43%)
SRCR 66..160 CDD:278931 39/93 (42%)
SR 193..298 CDD:214555 46/128 (36%)
SRCR 198..298 CDD:278931 44/123 (36%)
Lysyl_oxidase 303..503 CDD:279521 2/8 (25%)
Cd163NP_001163866.1 SR 50..150 CDD:214555
SRCR 55..150 CDD:278931
SR 157..258 CDD:214555
SRCR 165..257 CDD:278931
SR 265..365 CDD:214555
SRCR 270..365 CDD:278931
SR 372..472 CDD:214555
SRCR 377..472 CDD:278931
SR 478..577 CDD:214555
SRCR 482..577 CDD:278931
SR 582..682 CDD:214555
SRCR 587..682 CDD:278931
SR 719..819 CDD:214555 43/99 (43%)
SRCR 724..819 CDD:278931 39/94 (41%)
SRCR 835..926 CDD:278931 7/90 (8%)
SR 930..1030 CDD:214555 42/106 (40%)
SRCR 935..1029 CDD:278931 40/100 (40%)
Internalization signal 1091..1094
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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